RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 PCSK4Q6UW60 755 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 SLC36A4Q6YBV0 504 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 PAQR9Q6ZVX9 377 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 SPDYE1Q8NFV5 336 aaPredicted RBP11.05□□□□□ -0.64
SF3B3-204ENST00000563739 IPO4Q8TEX9 1081 aaKnown RBP11.05□□□□□ -0.64
SF3B3-204ENST00000563739 DNASE2BQ8WZ79 361 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 POMGNT1Q8WZA1 660 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 MRGPRX1Q96LB2 322 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 C8orf48Q96LL4 319 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 CEP295NLQ96MC4 621 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 ZNF518BQ9C0D4 1074 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 ITGA11Q9UKX5 1188 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 CDH9Q9ULB4 789 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 MYLKQ15746 1914 aa11.05□□□□□ -0.64
SF3B3-204ENST00000563739 COL5A1P20908 1838 aaPredicted RBP11.05□□□□□ -0.64
SF3B3-204ENST00000563739 E2F8A0AVK6 867 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 WASH3PC4AMC7 463 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 CLDN5O00501 218 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 ADH1CP00326 375 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 PCSK1P29120 753 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 NTSR1P30989 418 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 DDIT3P35638 169 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 LHX1P48742 406 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 ATXN3P54252 364 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-204ENST00000563739 PLEKHG6Q3KR16 790 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 MDH1BQ5I0G3 518 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 L1TD1Q5T7N2 865 aaKnown RBP11.04□□□□□ -0.64
SF3B3-204ENST00000563739 SLFN12LQ6IEE8 588 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 PGBD3Q8N328 593 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 CSGALNACT2Q8N6G5 542 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 FSIP1Q8NA03 581 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 RBBP8NLQ8NC74 664 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-204ENST00000563739 GLIS3Q8NEA6 775 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 MYCBPAPQ8TBZ2 947 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 HVCN1Q96D96 273 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 CCSER2Q9H7U1 834 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 SPHK2Q9NRA0 654 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 RBAKQ9NYW8 714 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-204ENST00000563739 IL37Q9NZH6 218 aa11.04□□□□□ -0.64
SF3B3-204ENST00000563739 USP36Q9P275 1121 aaKnown RBP11.04□□□□□ -0.64
SF3B3-204ENST00000563739 MAGEC2Q9UBF1 373 aaPredicted RBP11.04□□□□□ -0.64
SF3B3-204ENST00000563739 FAM92AA1XBS5 289 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 SLC26A4O43511 780 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 CACNG3O60359 315 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 PDGFRBP09619 1106 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 CISD3P0C7P0 127 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 MBL2P11226 248 aaPredicted RBP11.03□□□□□ -0.64
SF3B3-204ENST00000563739 HOXD13P35453 343 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 GAD2Q05329 585 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 CYP4F3Q08477 520 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 GNL2Q13823 731 aaKnown RBP11.03□□□□□ -0.64
SF3B3-204ENST00000563739 BYSLQ13895 437 aaKnown RBP11.03□□□□□ -0.64
SF3B3-204ENST00000563739 RILPL1Q5EBL4 403 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 SNX30Q5VWJ9 437 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 C4orf50Q6ZRC1 276 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 RABEPKQ7Z6M1 372 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 ZCCHC9Q8N567 271 aaKnown RBP11.03□□□□□ -0.64
SF3B3-204ENST00000563739 ZMIZ2Q8NF64 920 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 SCAMP5Q8TAC9 235 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 LARP4BQ92615 738 aaKnown RBP11.03□□□□□ -0.64
SF3B3-204ENST00000563739 B3GNT5Q9BYG0 378 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 ZHX3Q9H4I2 956 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 INTS13Q9NVM9 706 aa11.03□□□□□ -0.64
SF3B3-204ENST00000563739 WSB2Q9NYS7 404 aaPredicted RBP11.03□□□□□ -0.64
SF3B3-204ENST00000563739 KIAA1522Q9P206 1035 aaPredicted RBP11.03□□□□□ -0.64
SF3B3-204ENST00000563739 NYNRINQ9P2P1 1898 aaKnown RBP11.02□□□□□ -0.64
SF3B3-204ENST00000563739 FRMD3A2A2Y4 597 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 FAM149AA5PLN7 773 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.02□□□□□ -0.65
SF3B3-204ENST00000563739 SLC9A3R1O14745 358 aaPredicted RBP11.02□□□□□ -0.65
SF3B3-204ENST00000563739 CILPO75339 1184 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 TBCAO75347 108 aaKnown RBP11.02□□□□□ -0.65
SF3B3-204ENST00000563739 ZNF883P0CG24 379 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 GARTP22102 1010 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 GRIK1P39086 918 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 PDE6CP51160 858 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 CLDN6P56747 220 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 RBP5P82980 135 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 CYP27A1Q02318 531 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 ENPP2Q13822 863 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 PTPRNQ16849 979 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 DPH6Q7L8W6 267 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 DYMQ7RTS9 669 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 CBWD2Q8IUF1 395 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 SCUBE3Q8IX30 993 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 KCNV2Q8TDN2 545 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 CDK5RAP3Q96JB5 506 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 AK8Q96MA6 479 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 MKRN2Q9H000 416 aaKnown RBP11.02□□□□□ -0.65
SF3B3-204ENST00000563739 OSER1Q9NX31 292 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 MARK1Q9P0L2 795 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 TBC1D7Q9P0N9 293 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 BSNQ9UPA5 3926 aa11.02□□□□□ -0.65
SF3B3-204ENST00000563739 TEP1Q99973 2627 aaKnown RBP11.01□□□□□ -0.65
SF3B3-204ENST00000563739 A0A087X0B3 334 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 TBC1D3BA6NDS4 549 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 TRABD2BA6NFA1 517 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 TRIM66O15016 1216 aa11.01□□□□□ -0.65
SF3B3-204ENST00000563739 TLX3O43711 291 aaPredicted RBP11.01□□□□□ -0.65
SF3B3-204ENST00000563739 CST3P01034 146 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms