RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 RETP07949 1114 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 TRIM21P19474 475 aaKnown RBP10.87□□□□□ -0.67
CLK3-205ENST00000561673 SLC6A11P48066 632 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 MXI1P50539 228 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 FKBP3Q00688 224 aaKnown RBP10.87□□□□□ -0.67
CLK3-205ENST00000561673 SPEM2Q0P670 501 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 MESP2Q0VG99 397 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 CBWD6Q4V339 395 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 ZNF394Q53GI3 561 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 CBWD3Q5JTY5 395 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 CBWD5Q5RIA9 395 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 PPP1R26Q5T8A7 1209 aaPredicted RBP10.87□□□□□ -0.67
CLK3-205ENST00000561673 ISM2Q6H9L7 571 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 SYT13Q7L8C5 426 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 CAMKK1Q8N5S9 505 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 TATDN2Q93075 761 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 WBP2Q969T9 261 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 JAKMIP2Q96AA8 810 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 FAXDC2Q96IV6 333 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 HEXIM2Q96MH2 286 aaKnown RBP10.87□□□□□ -0.67
CLK3-205ENST00000561673 HHIPQ96QV1 700 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 TSG101Q99816 390 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 PARD6AQ9NPB6 346 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 TLR8Q9NR97 1041 aaKnown RBP10.87□□□□□ -0.67
CLK3-205ENST00000561673 OSER1Q9NX31 292 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 TBC1D14Q9P2M4 693 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 HOOK1Q9UJC3 728 aaKnown RBP10.87□□□□□ -0.67
CLK3-205ENST00000561673 SCML2Q9UQR0 700 aa10.87□□□□□ -0.67
CLK3-205ENST00000561673 CCDC163A0A0D9SF12 145 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 TRIM49BA6NDI0 452 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 SLC16A3O15427 465 aaKnown RBP10.86□□□□□ -0.67
CLK3-205ENST00000561673 ADH5P11766 374 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 ACO1P21399 889 aaKnown RBP10.86□□□□□ -0.67
CLK3-205ENST00000561673 SEC13P55735 322 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 DMC1Q14565 340 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 RSPO4Q2I0M5 234 aaPredicted RBP10.86□□□□□ -0.67
CLK3-205ENST00000561673 C2orf27AQ580R0 203 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 DCAF17Q5H9S7 520 aaPredicted RBP10.86□□□□□ -0.67
CLK3-205ENST00000561673 LY6G5CQ5SRR4 150 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 TCERG1LQ5VWI1 586 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 CEP68Q76N32 757 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 ERMP1Q7Z2K6 904 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 C12orf40Q86WS4 652 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 SFTPA1Q8IWL2 248 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 BBS7Q8IWZ6 715 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 ELOA2Q8IYF1 753 aaPredicted RBP10.86□□□□□ -0.67
CLK3-205ENST00000561673 FAM160A2Q8N612 972 aaPredicted RBP10.86□□□□□ -0.67
CLK3-205ENST00000561673 SLC4A11Q8NBS3 891 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 USP33Q8TEY7 942 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 GAB3Q8WWW8 586 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 TMEM176AQ96HP8 235 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 ARID3AQ99856 593 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 DUSP16Q9BY84 665 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 GTPBP4Q9BZE4 634 aaKnown RBP10.86□□□□□ -0.67
CLK3-205ENST00000561673 NACA2Q9H009 215 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 PNPLA8Q9NP80 782 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 CISHQ9NSE2 258 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 DLL3Q9NYJ7 618 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 USP18Q9UMW8 372 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 SH3BP1Q9Y3L3 701 aa10.86□□□□□ -0.67
CLK3-205ENST00000561673 A0A0A0MRY4 1105 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 A0A1W2PQH9 124 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 GREM1O60565 184 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 RPP40O75818 363 aaKnown RBP10.85□□□□□ -0.67
CLK3-205ENST00000561673 ADH1CP00326 375 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 IRF1P10914 325 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 CD44P16070 742 aaKnown RBP10.85□□□□□ -0.67
CLK3-205ENST00000561673 ATP5C1P36542 298 aaKnown RBP10.85□□□□□ -0.67
CLK3-205ENST00000561673 KIF11P52732 1056 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 RAD23BP54727 409 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 FOXK2Q01167 660 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 LRRC63Q05C16 580 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 PUM1Q14671 1186 aaKnown RBP eCLIP10.85□□□□□ -0.67
CLK3-205ENST00000561673 HTR3DQ70Z44 454 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 CACNA2D4Q7Z3S7 1137 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.85□□□□□ -0.67
CLK3-205ENST00000561673 TTC39CQ8N584 583 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 CCDC26Q8TAB7 109 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 ACDQ96AP0 544 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 OTUB2Q96DC9 234 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 DHTKD1Q96HY7 919 aaPredicted RBP10.85□□□□□ -0.67
CLK3-205ENST00000561673 PNKPQ96T60 521 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 DUSP9Q99956 384 aaKnown RBP10.85□□□□□ -0.67
CLK3-205ENST00000561673 KLF16Q9BXK1 252 aaPredicted RBP10.85□□□□□ -0.67
CLK3-205ENST00000561673 DNAI2Q9GZS0 605 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 NMUR1Q9HB89 426 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 CYLDQ9NQC7 956 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 ARMCX3Q9UH62 379 aaPredicted RBP10.85□□□□□ -0.67
CLK3-205ENST00000561673 EBF1Q9UH73 591 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 MAN1B1Q9UKM7 699 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 COQ4Q9Y3A0 265 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 USP3Q9Y6I4 520 aa10.85□□□□□ -0.67
CLK3-205ENST00000561673 PRR5-ARHGAP8B1AHC4 643 aa10.84□□□□□ -0.67
CLK3-205ENST00000561673 PSMA7O14818 248 aa10.84□□□□□ -0.67
CLK3-205ENST00000561673 AXIN1O15169 862 aa10.84□□□□□ -0.67
CLK3-205ENST00000561673 LRP3O75074 770 aa10.84□□□□□ -0.67
CLK3-205ENST00000561673 GADD45BO75293 160 aaPredicted RBP10.84□□□□□ -0.67
CLK3-205ENST00000561673 KAT7O95251 611 aa10.84□□□□□ -0.67
CLK3-205ENST00000561673 APBB3O95704 486 aa10.84□□□□□ -0.67
CLK3-205ENST00000561673 CCDC192P0DO97 292 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms