RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 KLC3Q6P597 504 aa17.13■□□□□ 0.33
TPM1-228ENST00000560975 MAP7D3Q8IWC1 876 aa17.13■□□□□ 0.33
TPM1-228ENST00000560975 ZNF606Q8WXB4 792 aa17.13■□□□□ 0.33
TPM1-228ENST00000560975 FBXL18Q96ME1 805 aa17.13■□□□□ 0.33
TPM1-228ENST00000560975 CATSPER2Q96P56 530 aa17.13■□□□□ 0.33
TPM1-228ENST00000560975 PCSK1NQ9UHG2 260 aa17.13■□□□□ 0.33
TPM1-228ENST00000560975 ASTN2O75129 1339 aaPredicted RBP17.13■□□□□ 0.33
TPM1-228ENST00000560975 A0A0B4J269 797 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 DHX15O43143 795 aaKnown RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 RFPL1O75677 317 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 VNN1O95497 513 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 IL1R2P27930 398 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 MAGEA8P43361 318 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 MAGEA10P43363 369 aaPredicted RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 ALDH1A3P47895 512 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 LRRC38Q5VT99 294 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 DUS1LQ6P1R4 473 aaKnown RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 C16orf46Q6P387 395 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 POLNQ7Z5Q5 900 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 ACER1Q8TDN7 264 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 PRPF31Q8WWY3 499 aaKnown RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 DDX56Q9NY93 547 aaKnown RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 GMEB1Q9Y692 573 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 TEX264Q9Y6I9 313 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 COL14A1Q05707 1796 aaKnown RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 C3orf70A6NLC5 250 aaPredicted RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 G3V3G9 751 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 RGL2O15211 777 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 ADCY3O60266 1144 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 CCDC166P0CW27 439 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 RBP3P10745 1247 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 COG7P83436 770 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 DCAF8Q5TAQ9 597 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 NPNTQ6UXI9 565 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 DCUN1D1Q96GG9 259 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 ZC3H12CQ9C0D7 883 aaKnown RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 EPB41L1Q9H4G0 881 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 TCEAL9Q9UHQ7 104 aa17.12■□□□□ 0.33
TPM1-228ENST00000560975 CCNL1Q9UK58 526 aaPredicted RBP17.12■□□□□ 0.33
TPM1-228ENST00000560975 NCF2P19878 526 aaPredicted RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 PSMA2P25787 234 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 TATDN1Q6P1N9 297 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 FAF2Q96CS3 445 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 ZNF778Q96MU6 729 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 PRPF18Q99633 342 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 SMYD2Q9NRG4 433 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 TMOD2Q9NZR1 351 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 SLC9A2Q9UBY0 812 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 APOBEC2Q9Y235 224 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 TTLL3Q9Y4R7 772 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 NUB1Q9Y5A7 615 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 BPGMP07738 259 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 RPL10AP62906 217 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 WASHC5Q12768 1159 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 CYLC2Q14093 348 aaPredicted RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 ZACNQ401N2 412 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 RC3H1Q5TC82 1133 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 VWA5B1Q5TIE3 1220 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 C15orf39Q6ZRI6 1047 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 WDR75Q8IWA0 830 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 TTC13Q8NBP0 860 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 IFT122Q9HBG6 1241 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 HOMER2Q9NSB8 354 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 BLOC1S6Q9UL45 172 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 SF3B1O75533 1304 aaKnown RBP eCLIP17.11■□□□□ 0.339e-6■■■■■ 68.9
TPM1-228ENST00000560975 GOLGB1Q14789 3259 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 H3BNX3 289 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 SIN3BO75182 1162 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 SNNO75324 88 aaPredicted RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 TRPA1O75762 1119 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 NLRP11P59045 1033 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 XIAPP98170 497 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 SNAPC2Q13487 334 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 TAF5Q15542 800 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 CNGA3Q16281 694 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 DARS2Q6PI48 645 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 ANO5Q75V66 913 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 CALN1Q9BXU9 219 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 COA1Q9GZY4 146 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 C17orf75Q9HAS0 396 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 FBXO28Q9NVF7 368 aa17.11■□□□□ 0.33
TPM1-228ENST00000560975 MRPL11Q9Y3B7 192 aaKnown RBP17.11■□□□□ 0.33
TPM1-228ENST00000560975 DNAJA2O60884 412 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 C4BPAP04003 597 aaKnown RBP17.1■□□□□ 0.33
TPM1-228ENST00000560975 TUBB3Q13509 450 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 ANGEL2Q5VTE6 544 aaKnown RBP17.1■□□□□ 0.33
TPM1-228ENST00000560975 HHIPL2Q6UWX4 724 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 LRRN4Q8WUT4 740 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 HSPH1Q92598 858 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 MRPL1Q9BYD6 325 aaKnown RBP17.1■□□□□ 0.33
TPM1-228ENST00000560975 COL20A1Q9P218 1284 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 ZC3H7BQ9UGR2 993 aaKnown RBP17.1■□□□□ 0.33
TPM1-228ENST00000560975 MCF2LO15068 1137 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 ITGAXP20702 1163 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 PTPN7P35236 360 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 RFC1P35251 1148 aaPredicted RBP17.1■□□□□ 0.33
TPM1-228ENST00000560975 PIGHQ14442 188 aaPredicted RBP17.1■□□□□ 0.33
TPM1-228ENST00000560975 FASTKD1Q53R41 847 aaKnown RBP17.1■□□□□ 0.33
TPM1-228ENST00000560975 TRAPPC3LQ5T215 181 aa17.1■□□□□ 0.33
TPM1-228ENST00000560975 PGM2L1Q6PCE3 622 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms