RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 MMP17Q9ULZ9 603 aa11.4□□□□□ -0.58
TPM1-227ENST00000560970 GOLGA6L22H0YM25 854 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 LEFTY2O00292 366 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 DCLK1O15075 740 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 SLC16A3O15427 465 aaKnown RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 PHACTR2O75167 634 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 ATP2C2O75185 946 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 KCNK5O95279 499 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 STAU1O95793 577 aaKnown RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 CAVIN2O95810 425 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 HLA-DRAP01903 254 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 EPB41P11171 864 aaKnown RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 HDCP19113 662 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 BDNFP23560 247 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 GRIK1P39086 918 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 NOVA1P51513 510 aaKnown RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 SEC13P55735 322 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 MCCD1P59942 119 aaPredicted RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 USP46P62068 366 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 NOP14P78316 857 aaKnown RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 SLC7A9P82251 487 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 FKBP3Q00688 224 aaKnown RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 PAK1Q13153 545 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 NCOA4Q13772 614 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 GAB4Q2WGN9 574 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 SPOPLQ6IQ16 392 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 SCARA5Q6ZMJ2 495 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 CYP2U1Q7Z449 544 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 FILIP1Q7Z7B0 1213 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 MDGA1Q8NFP4 955 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 MRPL45Q9BRJ2 306 aaKnown RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 TPSD1Q9BZJ3 242 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 ELOVL4Q9GZR5 314 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 SDCBP2Q9H190 292 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 SMYD3Q9H7B4 428 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 VRTNQ9H8Y1 702 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.39□□□□□ -0.59
TPM1-227ENST00000560970 TRPM5Q9NZQ8 1165 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 SPEGQ15772 3267 aa11.39□□□□□ -0.59
TPM1-227ENST00000560970 ASCC3Q8N3C0 2202 aaKnown RBP11.39□□□□□ -0.59
TPM1-227ENST00000560970 FAM208BQ5VWN6 2430 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 F8VP50 259 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 SLC9A3R1O14745 358 aaPredicted RBP11.38□□□□□ -0.59
TPM1-227ENST00000560970 OAS1P00973 400 aaKnown RBP11.38□□□□□ -0.59
TPM1-227ENST00000560970 KRT13P13646 458 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 LMO2P25791 158 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 EIF2DP41214 584 aaKnown RBP11.38□□□□□ -0.59
TPM1-227ENST00000560970 PPP1R2P41236 205 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 PIK3CAP42336 1068 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 PPP3CCP48454 512 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 AP3M2P53677 418 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 TNNC1P63316 161 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 ZXDBP98169 803 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 ENPEPQ07075 957 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 ZNF252P-AS1Q0IIN9 211 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 TRPC3Q13507 836 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 ZNF699Q32M78 642 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 DPCR1Q3MIW9 517 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 CBWD6Q4V339 395 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 USP39Q53GS9 565 aaKnown RBP11.38□□□□□ -0.59
TPM1-227ENST00000560970 DCAF17Q5H9S7 520 aaPredicted RBP11.38□□□□□ -0.59
TPM1-227ENST00000560970 MDH1BQ5I0G3 518 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 CBWD3Q5JTY5 395 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 CBWD5Q5RIA9 395 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 DDX42Q86XP3 938 aaKnown RBP eCLIP11.38□□□□□ -0.59
TPM1-227ENST00000560970 MYCBPAPQ8TBZ2 947 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 TAS1R2Q8TE23 839 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 SPACA7Q96KW9 195 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 MMS19Q96T76 1030 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 APOBEC3GQ9HC16 384 aaKnown RBP11.38□□□□□ -0.59
TPM1-227ENST00000560970 TMEM8AQ9HCN3 771 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 CPQQ9Y646 472 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 IGF2RP11717 2491 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 AKAP13Q12802 2813 aa11.38□□□□□ -0.59
TPM1-227ENST00000560970 CKAP5Q14008 2032 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 ZNF840PA6NDX5 716 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 K7EQS6 105 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 IKBKBO14920 756 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 ZZEF1O43149 2961 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 TACC1O75410 805 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 ALDH1A2O94788 518 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 ADH1CP00326 375 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 BCKDHBP21953 392 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 ATICP31939 592 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 MXI1P50539 228 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 MRPS21P82921 87 aaKnown RBP11.37□□□□□ -0.59
TPM1-227ENST00000560970 CRY1Q16526 586 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 WDR72Q3MJ13 1102 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 HSF5Q4G112 596 aaPredicted RBP11.37□□□□□ -0.59
TPM1-227ENST00000560970 C2orf27AQ580R0 203 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 DAB2IPQ5VWQ8 1189 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 FOXR2Q6PJQ5 311 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 RBM43Q6ZSC3 357 aaKnown RBP11.37□□□□□ -0.59
TPM1-227ENST00000560970 WHAMMQ8TF30 809 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 SEMA4DQ92854 862 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 SLC35C1Q96A29 364 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 SYAP1Q96A49 352 aaPredicted RBP11.37□□□□□ -0.59
TPM1-227ENST00000560970 C8orf48Q96LL4 319 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 CEP63Q96MT8 703 aa11.37□□□□□ -0.59
TPM1-227ENST00000560970 SLITRK1Q96PX8 696 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms