RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 FAM71BQ8TC56 605 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 HSPH1Q92598 858 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 NKD2Q969F2 451 aaPredicted RBP13.26□□□□□ -0.29
USP3-213ENST00000559711 ARMC5Q96C12 935 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 TMEM209Q96SK2 561 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 ADAM33Q9BZ11 813 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 PNPLA8Q9NP80 782 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 TBX21Q9UL17 535 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 LRFN2Q9ULH4 789 aa13.26□□□□□ -0.29
USP3-213ENST00000559711 ZNF487B1APH4 448 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 NRP1O14786 923 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 TADA2AO75478 443 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 BDNFP23560 247 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 CDH6P55285 790 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 DAOAP59103 153 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 KRT17Q04695 432 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 BYSLQ13895 437 aaKnown RBP13.25□□□□□ -0.29
USP3-213ENST00000559711 PPP1R7Q15435 360 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 OASLQ15646 514 aaKnown RBP13.25□□□□□ -0.29
USP3-213ENST00000559711 ALS2CLQ60I27 953 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 SCYL2Q6P3W7 929 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 GPRIN1Q7Z2K8 1008 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 NPAS4Q8IUM7 802 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 MAP7D3Q8IWC1 876 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 SCML4Q8N228 414 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 TTC13Q8NBP0 860 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 TSEN2Q8NCE0 465 aaKnown RBP13.25□□□□□ -0.29
USP3-213ENST00000559711 SLC35B2Q8TB61 432 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 NDRG1Q92597 394 aaKnown RBP13.25□□□□□ -0.29
USP3-213ENST00000559711 FAM149B1Q96BN6 582 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 ULBP1Q9BZM6 244 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.25□□□□□ -0.29
USP3-213ENST00000559711 DNPEPQ9ULA0 475 aa13.25□□□□□ -0.29
USP3-213ENST00000559711 PRG3Q9Y2Y8 225 aaPredicted RBP13.25□□□□□ -0.29
USP3-213ENST00000559711 CST8O60676 142 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 ALDH2P05091 517 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 IL4RP24394 825 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 IVDP26440 423 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 CYP2C18P33260 490 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 GATMP50440 423 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 VCPP55072 806 aaKnown RBP13.24□□□□□ -0.29
USP3-213ENST00000559711 GPS2Q13227 327 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 DPYSL3Q14195 570 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 MRPL58Q14197 206 aaKnown RBP13.24□□□□□ -0.29
USP3-213ENST00000559711 ERMARDQ5T6L9 678 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 PM20D1Q6GTS8 502 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 C4orf50Q6ZRC1 276 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 IQCKQ8N0W5 287 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 ANKLE1Q8NAG6 615 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 IRGQQ8WZA9 623 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 LRRC45Q96CN5 670 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 NPY6RQ99463 290 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 FMO2Q99518 471 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 SNRNP25Q9BV90 132 aaKnown RBP13.24□□□□□ -0.29
USP3-213ENST00000559711 COLEC11Q9BWP8 271 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 MRPL9Q9BYD2 267 aaKnown RBP13.24□□□□□ -0.29
USP3-213ENST00000559711 RHOBTB2Q9BYZ6 727 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 PPP1R12CQ9BZL4 782 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 ZCWPW1Q9H0M4 648 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 POPDC2Q9HBU9 364 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 DMAP1Q9NPF5 467 aaPredicted RBP13.24□□□□□ -0.29
USP3-213ENST00000559711 WHRNQ9P202 907 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 ADAM28Q9UKQ2 775 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 APOC4-APOC2K7ER74 178 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 ZBED1O96006 694 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 APOC2P02655 101 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 FYNP06241 537 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 ITGAVP06756 1048 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 ITIH2P19823 946 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 KLRC2P26717 231 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 GJA8P48165 433 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 CDR1P51861 262 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 RABGGTBP53611 331 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 PLTPP55058 493 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 TFDP2Q14188 446 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 DPYSL2Q16555 572 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 DCAF6Q58WW2 860 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 BHLHA9Q7RTU4 235 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 DNAJC5GQ8N7S2 189 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 FBXO25Q8TCJ0 367 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 DIS3LQ8TF46 1054 aaKnown RBP13.24□□□□□ -0.29
USP3-213ENST00000559711 ART4Q93070 314 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 FAF2Q96CS3 445 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 VWCEQ96DN2 955 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 CCDC114Q96M63 670 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 RNF157Q96PX1 679 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 FAM118BQ9BPY3 351 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 TMEM175Q9BSA9 504 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 CALN1Q9BXU9 219 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 TXLNGYQ9BZA5 131 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 PCDH18Q9HCL0 1135 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 USP3Q9Y6I4 520 aa13.24□□□□□ -0.29
USP3-213ENST00000559711 YJEFN3A6XGL0 299 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 E7ENQ6 273 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 AGPSO00116 658 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 TP73O15350 636 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 L1CAMP32004 1257 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 SLC11A1P49279 550 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 ATXN1P54253 815 aaKnown RBP13.23□□□□□ -0.29
USP3-213ENST00000559711 MMRN1Q13201 1228 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms