RNA–Protein interactions for RNA: ENST00000559152.5

CLPX-204, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 2,228 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-204ENST00000559152 SGSM3Q96HU1 749 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 PIWIL1Q96J94 861 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 HNRNPABQ99729 332 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 DPEP3Q9H4B8 488 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 SPC25Q9HBM1 224 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 PCDH18Q9HCL0 1135 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 XPO7Q9UIA9 1087 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 NME7Q9Y5B8 376 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 BCLAF3A2AJT9 711 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 RASA4BC9J798 803 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 CHADO15335 359 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 RASA4O43374 803 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 VIMP08670 466 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 ADORA2BP29275 332 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 NR2C2P49116 596 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 MRPS6P82932 125 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 ZNF200P98182 395 aaPredicted RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 SREBF2Q12772 1141 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 MMRN1Q13201 1228 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 XRCC4Q13426 336 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 ITIH4Q14624 930 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 DPYSL2Q16555 572 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 VSTM1Q6UX27 236 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 CCDC121Q6ZUS5 278 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 PSTKQ8IV42 348 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 PALM2Q8IXS6 379 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 MAML1Q92585 1016 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 RTP4Q96DX8 246 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 C11orf84Q9BUA3 381 aaPredicted RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 SNRNP25Q9BV90 132 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 RNF39Q9H2S5 420 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLPX-204ENST00000559152 CTNNAL1Q9UBT7 734 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 TBK1Q9UHD2 729 aa11.76□□□□□ -0.53
CLPX-204ENST00000559152 SMG5Q9UPR3 1016 aaKnown RBP11.76□□□□□ -0.53
CLPX-204ENST00000559152 SPTLC1O15269 473 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 SPAG6O75602 509 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 FGFR1P11362 822 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 CCDC130P13994 396 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 IL4RP24394 825 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 LMO2P25791 158 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 HDAC4P56524 1084 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 GEMIN4P57678 1058 aaKnown RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 GJA9P57773 515 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 BASP1P80723 227 aaKnown RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 IFT88Q13099 833 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 TMED2Q15363 201 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 QPCTQ16769 361 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 CHADLQ6NUI6 762 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 BZW1Q7L1Q6 419 aaKnown RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 PIGWQ7Z7B1 504 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 ZC3H18Q86VM9 953 aaKnown RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 CDKL3Q8IVW4 592 aaPredicted RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 SRRM1Q8IYB3 904 aaKnown RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 B3GALNT2Q8NCR0 500 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 SLC2A14Q8TDB8 520 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 PSMC3IPQ9P2W1 217 aaPredicted RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 ZMYND8Q9ULU4 1186 aaPredicted RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 TRPV2Q9Y5S1 764 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 CENPFP49454 3210 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 FAM47DPA6NHR8 397 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 ZBED1O96006 694 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 C6orf222P0C671 652 aaPredicted RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 LCP1P13796 627 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 STX2P32856 288 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 PPARDQ03181 441 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 ZC3H12AQ5D1E8 599 aaKnown RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 RNF187Q5TA31 235 aaPredicted RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 MFSD14CQ5VZR4 134 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 C1orf228Q6PIY5 440 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 TAX1BP1Q86VP1 789 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 FAM228AQ86W67 206 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 CYP4X1Q8N118 509 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 TMEM86AQ8N2M4 240 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 CKAP2Q8WWK9 683 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 KCTD13Q8WZ19 329 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 SMC6Q96SB8 1091 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 DUSP16Q9BY84 665 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 B3GNT5Q9BYG0 378 aa11.75□□□□□ -0.53
CLPX-204ENST00000559152 ACTR5Q9H9F9 607 aaPredicted RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 RCOR3Q9P2K3 495 aaPredicted RBP11.75□□□□□ -0.53
CLPX-204ENST00000559152 POC1B-GALNT4F8VUJ3 575 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 GOLGA8MH3BSY2 632 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 CYB561D2O14569 222 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 PRPF4O43172 522 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLPX-204ENST00000559152 ZNF189O75820 626 aaPredicted RBP11.74□□□□□ -0.53
CLPX-204ENST00000559152 KRT15P19012 456 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 GBP2P32456 591 aaPredicted RBP11.74□□□□□ -0.53
CLPX-204ENST00000559152 MATKP42679 507 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 PSMC4P43686 418 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 IFNAR2P48551 515 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 LHX1P48742 406 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 IL9RQ01113 521 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 SOX4Q06945 474 aaPredicted RBP11.74□□□□□ -0.53
CLPX-204ENST00000559152 FASTKD3Q14CZ7 662 aaKnown RBP11.74□□□□□ -0.53
CLPX-204ENST00000559152 EFHC2Q5JST6 749 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 GNASQ5JWF2 1037 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 C3orf62Q6ZUJ4 267 aa11.74□□□□□ -0.53
CLPX-204ENST00000559152 TRABD2AQ86V40 505 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms