RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 NACC2Q96BF6 587 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 RNF31Q96EP0 1072 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 MPP4Q96JB8 637 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 HAPLN3Q96S86 360 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 MPHOSPH9Q99550 1183 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 MLST8Q9BVC4 326 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 EIF2AQ9BY44 585 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 SIK2Q9H0K1 926 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 DHX36Q9H2U1 1008 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 PABPC3Q9H361 631 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 R3HDMLQ9H3Y0 253 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 RNPEPQ9H4A4 650 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 TMEM8AQ9HCN3 771 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 SEPSECSQ9HD40 501 aaKnown RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 ZSCAN32Q9NX65 697 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 IFT80Q9P2H3 777 aaPredicted RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 RGS17Q9UGC6 210 aaPredicted RBP1.91□□□□□ -2.1
USP3-209ENST00000558925 ZNHIT2Q9UHR6 403 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 SORCS3Q9UPU3 1222 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 SHOC2Q9UQ13 582 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 CRYL1Q9Y2S2 319 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 DTNAQ9Y4J8 743 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 PAXBP1Q9Y5B6 917 aa1.91□□□□□ -2.1
USP3-209ENST00000558925 PRAMEF33A0A0G2JMD5 474 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 A0A1B0GVC2 190 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 A0A1W2PS29 197 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 GRID2IPA4D2P6 1211 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 UNC119BA6NIH7 251 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 AQP7P3A6NL99 342 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 KIF28PB7ZC32 967 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 F5H697 171 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PPM1DO15297 605 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 IRAK2O43187 625 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PRAMEF10O60809 474 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 COQ9O75208 318 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 TAF5LO75529 589 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 RPP40O75818 363 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 FAM155BO75949 473 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 KRT38O76015 456 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 INMTO95050 263 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 RHOP08100 348 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ANXA6P08133 673 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ITGA2BP08514 1039 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CYP21A2P08686 494 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CYP2C9P11712 490 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 XRCC6P12956 609 aaKnown RBP eCLIP1.9□□□□□ -2.11
USP3-209ENST00000558925 ATP1A3P13637 1013 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PPP3CBP16298 524 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 RXRAP19793 462 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ITGALP20701 1170 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 NR4A1P22736 598 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 GATA3P23771 443 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CD6P30203 668 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 LRPAP1P30533 357 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 UQCRC1P31930 480 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ADD2P35612 726 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 LIFRP42702 1097 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 MAN2A2P49641 1150 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ANXA11P50995 505 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 CLCN2P51788 898 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PGDP52209 483 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 BCAT1P54687 386 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ARL4CP56559 192 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 GEMIN4P57678 1058 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 AP2B1P63010 937 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CXADRP78310 365 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 NSUN2Q08J23 767 aaKnown RBP eCLIP1.9□□□□□ -2.11
USP3-209ENST00000558925 EIF2B5Q13144 721 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 CRHR2Q13324 411 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PDCLQ13371 301 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 DYRK1AQ13627 763 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CNGB1Q14028 1251 aaPredicted RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 TOB2Q14106 344 aaPredicted RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 TAF12Q16514 161 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CYP2A13Q16696 494 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 FAM110CQ1W6H9 321 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 PRR16Q569H4 304 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 METTL24Q5JXM2 366 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ARL6IP4Q66PJ3 421 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 NAIF1Q69YI7 327 aaPredicted RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 KRTAP5-4Q6L8H1 288 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 RINT1Q6NUQ1 792 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 USP17L6PQ6QN14 398 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CLEC9AQ6UXN8 241 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 HTR3DQ70Z44 454 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 RHOUQ7L0Q8 258 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 RASGRP2Q7LDG7 609 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 MAATS1Q7Z4T9 603 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 CLNKQ7Z7G1 428 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 C2CD5Q86YS7 1000 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 HERC6Q8IVU3 1022 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 SLC44A2Q8IWA5 706 aaPredicted RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 GSPT2Q8IYD1 628 aaKnown RBP1.9□□□□□ -2.11
USP3-209ENST00000558925 ANKRD35Q8N283 1001 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 TMEM132CQ8N3T6 1108 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 FAM109AQ8N4B1 249 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 ESX1Q8N693 406 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 C11orf44Q8N8P7 122 aa1.9□□□□□ -2.11
USP3-209ENST00000558925 TEX19Q8NA77 164 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms