RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 TAF4O00268 1085 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 DLATP10515 647 aaKnown RBP13.44□□□□□ -0.26
SHMT2-223ENST00000556689 HOXB2P14652 356 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 TNNI1P19237 187 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 STAT6P42226 847 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 WASP42768 502 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 SLC14A1Q13336 389 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 TRIP6Q15654 476 aaKnown RBP13.44□□□□□ -0.26
SHMT2-223ENST00000556689 C8orf34Q49A92 452 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 C10orf76Q5T2E6 689 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 SNX30Q5VWJ9 437 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 RAB44Q7Z6P3 723 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-223ENST00000556689 TMEM25Q86YD3 366 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 BBS7Q8IWZ6 715 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 TRIML1Q8N9V2 468 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 TERB1Q8NA31 727 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 RDH13Q8NBN7 331 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 B3GALNT2Q8NCR0 500 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 ZFRQ96KR1 1074 aaKnown RBP13.44□□□□□ -0.26
SHMT2-223ENST00000556689 KCNK16Q96T55 309 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 DUSP9Q99956 384 aaKnown RBP13.44□□□□□ -0.26
SHMT2-223ENST00000556689 DPEP3Q9H4B8 488 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 FAM124BQ9H5Z6 455 aaPredicted RBP13.44□□□□□ -0.26
SHMT2-223ENST00000556689 DNAAF2Q9NVR5 837 aaKnown RBP13.44□□□□□ -0.26
SHMT2-223ENST00000556689 PCDHB9Q9Y5E1 797 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 BAHCC1Q9P281 2608 aa13.44□□□□□ -0.26
SHMT2-223ENST00000556689 KIAA1549LQ6ZVL6 1849 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 IGHV1OR15-9A0A0B4J2B8 117 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 A0A1W2PQF6 199 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 SH3BP5O60239 455 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 CD2BP2O95400 341 aaKnown RBP13.43□□□□□ -0.26
SHMT2-223ENST00000556689 CAPNS1P04632 268 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 PLEKHG6Q3KR16 790 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 SYCP2LQ5T4T6 812 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 PROSER1Q86XN7 944 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 SLC41A1Q8IVJ1 513 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 CHPFQ8IZ52 775 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 RGL4Q8IZJ4 473 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 OR2I1PQ8NGU4 316 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 SCAMP5Q8TAC9 235 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 IPO4Q8TEX9 1081 aaKnown RBP13.43□□□□□ -0.26
SHMT2-223ENST00000556689 ZNF419Q96HQ0 510 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-223ENST00000556689 CAMK1GQ96NX5 476 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 CCSER2Q9H7U1 834 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 NXF1Q9UBU9 619 aaKnown RBP13.43□□□□□ -0.26
SHMT2-223ENST00000556689 HCN2Q9UL51 889 aa13.43□□□□□ -0.26
SHMT2-223ENST00000556689 ATP8B3O60423 1300 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 AKAP13Q12802 2813 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 FREM2Q5SZK8 3169 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 GON4LQ3T8J9 2241 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 VPS37CA5D8V6 355 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-223ENST00000556689 TRIM24O15164 1050 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 NDUFS2O75306 463 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 GNSP15586 552 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 TUBP50607 506 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 SCAPQ12770 1279 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 TRPC3Q13507 836 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 SNRNP35Q16560 246 aaKnown RBP13.42□□□□□ -0.26
SHMT2-223ENST00000556689 GRAMD4Q6IC98 578 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 MIB1Q86YT6 1006 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 GLIS3Q8NEA6 775 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 CCDC127Q96BQ5 260 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 HSPA12BQ96MM6 686 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 XPO6Q96QU8 1125 aaKnown RBP13.42□□□□□ -0.26
SHMT2-223ENST00000556689 MED10Q9BTT4 135 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 NACA2Q9H009 215 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 DNAJC17Q9NVM6 304 aaKnown RBP13.42□□□□□ -0.26
SHMT2-223ENST00000556689 COMMD8Q9NX08 183 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 IL37Q9NZH6 218 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 CYP8B1Q9UNU6 501 aa13.42□□□□□ -0.26
SHMT2-223ENST00000556689 PTPRDP23468 1912 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 A0A087X0B3 334 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 STAU1O95793 577 aaKnown RBP13.41□□□□□ -0.26
SHMT2-223ENST00000556689 ZDHHC11BP0C7U3 371 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 IRF1P10914 325 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 NDUFV2P19404 249 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 ATICP31939 592 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 HOXD13P35453 343 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 CEBPZQ03701 1054 aaKnown RBP13.41□□□□□ -0.26
SHMT2-223ENST00000556689 PSMD6Q15008 389 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 EGFLAMQ63HQ2 1017 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 HTR3DQ70Z44 454 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 SCFD1Q8WVM8 642 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 ADAMTS14Q8WXS8 1223 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 FOXJ1Q92949 421 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 HPS3Q969F9 1004 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 WBP2Q969T9 261 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 SYAP1Q96A49 352 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-223ENST00000556689 ACOX2Q99424 681 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 CGRRF1Q99675 332 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 BACH2Q9BYV9 841 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 ZDHHC5Q9C0B5 715 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 LRRC27Q9C0I9 530 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 GMIPQ9P107 970 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 WDR35Q9P2L0 1181 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 SUSD2Q9UGT4 822 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 GPSM3Q9Y4H4 160 aa13.41□□□□□ -0.26
SHMT2-223ENST00000556689 IGF2RP11717 2491 aa13.4□□□□□ -0.26
SHMT2-223ENST00000556689 NEDD8-MDP1E9PL57 170 aa13.4□□□□□ -0.26
SHMT2-223ENST00000556689 EIF3DO15371 548 aaKnown RBP eCLIP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms