RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 LSM14BQ9BX40 385 aaKnown RBP12.15□□□□□ -0.46
NEK3-204ENST00000552973 MMRN2Q9H8L6 949 aa12.15□□□□□ -0.46
NEK3-204ENST00000552973 BCCIPQ9P287 314 aaKnown RBP eCLIP12.15□□□□□ -0.46
NEK3-204ENST00000552973 MAPK8IP1Q9UQF2 711 aa12.15□□□□□ -0.46
NEK3-204ENST00000552973 CACNA1AO00555 2505 aa12.15□□□□□ -0.46
NEK3-204ENST00000552973 A0A0A0MRY4 1105 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 TCRBV21S2A2A0A5A6 115 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 PDXKO00764 312 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 GIPC1O14908 333 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 KHNYNO15037 678 aaKnown RBP12.14□□□□□ -0.47
NEK3-204ENST00000552973 MAP3K13O43283 966 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 ADAM23O75077 832 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 TULP3O75386 442 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 KCNK5O95279 499 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 HLA-DRAP01903 254 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 RPN1P04843 607 aaKnown RBP12.14□□□□□ -0.47
NEK3-204ENST00000552973 ZDHHC11BP0C7U3 371 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 PRR29P0C7W0 189 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 CHRM1P11229 460 aaPredicted RBP12.14□□□□□ -0.47
NEK3-204ENST00000552973 PDIA4P13667 645 aaKnown RBP12.14□□□□□ -0.47
NEK3-204ENST00000552973 P4HA1P13674 534 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 PIK3CAP42336 1068 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 WASP42768 502 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 KIR2DL1P43626 348 aaPredicted RBP12.14□□□□□ -0.47
NEK3-204ENST00000552973 ZACNQ401N2 412 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 EOGTQ5NDL2 527 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 C1orf220Q5T0J3 134 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 SNX30Q5VWJ9 437 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 BTBD8Q5XKL5 378 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 ATL3Q6DD88 541 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 PSAPL1Q6NUJ1 521 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 GPRIN1Q7Z2K8 1008 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 CYP2U1Q7Z449 544 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 TMEFF1Q8IYR6 380 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 CRYBG2Q8N1P7 616 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 PHTF2Q8N3S3 785 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 DEFB119Q8N690 84 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 KIAA1958Q8N8K9 716 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 HMGB4Q8WW32 186 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 POLMQ9NP87 494 aaPredicted RBP12.14□□□□□ -0.47
NEK3-204ENST00000552973 SPHK2Q9NRA0 654 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 IL37Q9NZH6 218 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 NUDT5Q9UKK9 219 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 FRYLO94915 3013 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 OBSL1O75147 1896 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 ATG2BQ96BY7 2078 aa12.14□□□□□ -0.47
NEK3-204ENST00000552973 NCOR2Q9Y618 2525 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 LNP1A1A4G5 178 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.13□□□□□ -0.47
NEK3-204ENST00000552973 MDM4O15151 490 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 CALUO43852 315 aaPredicted RBP12.13□□□□□ -0.47
NEK3-204ENST00000552973 TLR5O60602 858 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 FAM200BP0CF97 657 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 TRIM49P0CI25 452 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 TRIM49CP0CI26 452 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 CD58P19256 250 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 PMLP29590 882 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 EIF2DP41214 584 aaKnown RBP12.13□□□□□ -0.47
NEK3-204ENST00000552973 TNFRSF4P43489 277 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 ASPAP45381 313 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 GCLMP48507 274 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 VAMP7P51809 220 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 IRX4P78413 519 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 ST3GAL2Q16842 350 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 C10orf76Q5T2E6 689 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 TPGS1Q6ZTW0 290 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 C11orf74Q86VG3 221 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 ETFBKMTQ8IXQ9 262 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 OLIG1Q8TAK6 271 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 TMC2Q8TDI7 906 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 WHAMMQ8TF30 809 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 CYFIP2Q96F07 1278 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 APOBEC3GQ9HC16 384 aaKnown RBP12.13□□□□□ -0.47
NEK3-204ENST00000552973 COMMD8Q9NX08 183 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 OSER1Q9NX31 292 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 DEC1Q9P2X7 70 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 MBD1Q9UIS9 605 aaPredicted RBP12.13□□□□□ -0.47
NEK3-204ENST00000552973 ANGPTL2Q9UKU9 493 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 FRMD4BQ9Y2L6 1034 aa12.13□□□□□ -0.47
NEK3-204ENST00000552973 FAM92AA1XBS5 289 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 CYP26A1O43174 497 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 KIF20AO95235 890 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 ASS1P00966 412 aaKnown RBP12.12□□□□□ -0.47
NEK3-204ENST00000552973 ACO1P21399 889 aaKnown RBP12.12□□□□□ -0.47
NEK3-204ENST00000552973 CMA1P23946 247 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 P2RY2P41231 377 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 PTGER3P43115 390 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 TUBP50607 506 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 NOVA1P51513 510 aaKnown RBP12.12□□□□□ -0.47
NEK3-204ENST00000552973 UAP1L1Q3KQV9 507 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 ZNF394Q53GI3 561 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 DAB2IPQ5VWQ8 1189 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 CLEC20AQ6ZU45 233 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 LPCAT2Q7L5N7 544 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 UNC93AQ86WB7 457 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 MIB1Q86YT6 1006 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 ZNF513Q8N8E2 541 aaPredicted RBP12.12□□□□□ -0.47
NEK3-204ENST00000552973 TAS1R2Q8TE23 839 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 BHMTQ93088 406 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms