RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 HAUS5O94927 633 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 HMGCRP04035 888 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 INHBAP08476 426 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 DLDP09622 509 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 DHRS4L1P0CG22 281 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 IL4RP24394 825 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 EDNRBP24530 442 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 RBL1P28749 1068 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CCNG1P51959 295 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 MBTD1Q05BQ5 628 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 SMAD1Q15797 465 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 MDH1BQ5I0G3 518 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 OR6B2Q6IFH4 312 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 EFCAB12Q6NXP0 572 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 APBB1IPQ7Z5R6 666 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CHST13Q8NET6 341 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 CXorf38Q8TB03 319 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 MICAL1Q8TDZ2 1067 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 SKA1Q96BD8 255 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 PTCD3Q96EY7 689 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 TMEM176AQ96HP8 235 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 FZD8Q9H461 694 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 RPF1Q9H9Y2 349 aaKnown RBP7.81□□□□□ -1.16
LIMA1-213ENST00000552720 PPCSQ9HAB8 311 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 USP29Q9HBJ7 922 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 LNPEPQ9UIQ6 1025 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 TTLL3Q9Y4R7 772 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 IKBKGQ9Y6K9 419 aa7.81□□□□□ -1.16
LIMA1-213ENST00000552720 IGKV6-21A0A0C4DH24 114 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 IQANK1A0A1B0GTG1 560 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 NOP56O00567 594 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SOCS7O14512 581 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 TRAFD1O14545 582 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ENDOD1O94919 500 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ZBTB7AO95365 584 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 PDHA1P08559 390 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 MYL2P10916 166 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 PDGFRAP16234 1089 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 TFE3P19532 575 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 GPD1P21695 349 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 RPS12P25398 132 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 RXRBP28702 533 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SERPINB4P48594 390 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 MRPS5P82675 430 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SLC18A2Q05940 514 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 MXD4Q14582 209 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SURF1Q15526 300 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 HSF5Q4G112 596 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 GJC2Q5T442 439 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ZNF772Q68DY9 489 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 TRMT10BQ6PF06 316 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 C4orf50Q6ZRC1 276 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 CAND1Q86VP6 1230 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 FBXO16Q8IX29 292 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 PLD5Q8N7P1 536 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 NETO2Q8NC67 525 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 CCDC110Q8TBZ0 833 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 WDR60Q8WVS4 1066 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SPDL1Q96EA4 605 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 FGD4Q96M96 766 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 LPIN3Q9BQK8 851 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SLC13A1Q9BZW2 595 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 C20orf27Q9GZN8 174 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 NMUR2Q9GZQ4 415 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 TLE6Q9H808 572 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 RSAD1Q9HA92 442 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 NGRNQ9NPE2 291 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 RNF19AQ9NV58 838 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 CNTN3Q9P232 1028 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 MARCOQ9UEW3 520 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ZSWIM8A7E2V4 1837 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 C2CD4BA6NLJ0 364 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 GSC2O15499 205 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 SMNDC1O75940 238 aaKnown RBP eCLIP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 KRT36O76013 467 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 NEBLO76041 1014 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 APRTP07741 180 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 STAG3L1P0CL83 205 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 CSH1P0DML2 217 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 CSH2P0DML3 217 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 KITP10721 976 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 GRIA1P42261 906 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 MLLT3P42568 568 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 TUBP50607 506 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 RASSF2P50749 326 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ZNF143P52747 638 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 NDST1P52848 882 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ATXN1P54253 815 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 CDK16Q00536 496 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ZBTB16Q05516 673 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 VGLL4Q14135 290 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 KPNB1Q14974 876 aaKnown RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ACSBG2Q5FVE4 666 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 PPP6R3Q5H9R7 873 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ANO7Q6IWH7 933 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 MPP5Q8N3R9 675 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 PQLC3Q8N755 202 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 ARMC2Q8NEN0 867 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 DTX3LQ8TDB6 740 aa7.8□□□□□ -1.16
LIMA1-213ENST00000552720 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms