RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 BTBD8Q5XKL5 378 aa13.63□□□□□ -0.23
PTCH1-218ENST00000548945 PAQR9Q6ZVX9 377 aa13.63□□□□□ -0.23
PTCH1-218ENST00000548945 SLC9A9Q8IVB4 645 aa13.63□□□□□ -0.23
PTCH1-218ENST00000548945 PARD3BQ8TEW8 1205 aa13.63□□□□□ -0.23
PTCH1-218ENST00000548945 KCNK16Q96T55 309 aa13.63□□□□□ -0.23
PTCH1-218ENST00000548945 SMYD3Q9H7B4 428 aa13.63□□□□□ -0.23
PTCH1-218ENST00000548945 CHORDC1Q9UHD1 332 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-218ENST00000548945 SH3BP1Q9Y3L3 701 aa13.63□□□□□ -0.23
PTCH1-218ENST00000548945 ANTXRLA6NF34 631 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 MAP3K13O43283 966 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 ADAM23O75077 832 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 P4HA1P13674 534 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 BIRC3Q13489 604 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 SH3PXD2AQ5TCZ1 1133 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 ATL3Q6DD88 541 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 SYT12Q8IV01 421 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 SFTPA1Q8IWL2 248 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 SCAMP5Q8TAC9 235 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 PLEKHO2Q8TD55 490 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 PIGKQ92643 395 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 MED10Q9BTT4 135 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 FBXO44Q9H4M3 255 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 CCSER2Q9H7U1 834 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 CSNK1G1Q9HCP0 422 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 SLC39A2Q9NP94 309 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 SPHK2Q9NRA0 654 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 DMAC2Q9NW81 257 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 FAM13BQ9NYF5 915 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 BCCIPQ9P287 314 aaKnown RBP eCLIP13.62□□□□□ -0.23
PTCH1-218ENST00000548945 DEC1Q9P2X7 70 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 STARD13Q9Y3M8 1113 aa13.62□□□□□ -0.23
PTCH1-218ENST00000548945 WDFY3Q8IZQ1 3526 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 TBC1D3BA6NDS4 549 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 LRRIQ3A6PVS8 624 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-218ENST00000548945 PATE3B3GLJ2 98 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 SCAMP3O14828 347 aaKnown RBP13.61□□□□□ -0.23
PTCH1-218ENST00000548945 TULP3O75386 442 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 AP1G2O75843 785 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 C4BPAP04003 597 aaKnown RBP13.61□□□□□ -0.23
PTCH1-218ENST00000548945 RPN1P04843 607 aaKnown RBP13.61□□□□□ -0.23
PTCH1-218ENST00000548945 PROS1P07225 676 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 CASP4P49662 377 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 CDH8P55286 799 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 IRX4P78413 519 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 KDSRQ06136 332 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 ZNF252P-AS1Q0IIN9 211 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 SGSM1Q2NKQ1 1148 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 MAP7D1Q3KQU3 841 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 EMC10Q5UCC4 262 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 PEAR1Q5VY43 1037 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-218ENST00000548945 RESP18Q5W5W9 173 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 UNC93AQ86WB7 457 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 TTC30AQ86WT1 665 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 FUKQ8N0W3 1084 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 CRYBG2Q8N1P7 616 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 ZNF513Q8N8E2 541 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-218ENST00000548945 TERB1Q8NA31 727 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 HMGB4Q8WW32 186 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 TAF4BQ92750 862 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 NUSAP1Q9BXS6 441 aaKnown RBP13.61□□□□□ -0.23
PTCH1-218ENST00000548945 BLZF1Q9H2G9 400 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 FOXD4L1Q9NU39 408 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 WASF3Q9UPY6 502 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 SPEGQ15772 3267 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 ATRXP46100 2492 aa13.61□□□□□ -0.23
PTCH1-218ENST00000548945 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 TCRBV21S2A2A0A5A6 115 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 GIPC1O14908 333 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 AP5Z1O43299 807 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 VNN1O95497 513 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 TRIM21P19474 475 aaKnown RBP13.6□□□□□ -0.23
PTCH1-218ENST00000548945 CASP1P29466 404 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 CUL4BQ13620 913 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 ZACNQ401N2 412 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 TRIM61Q5EBN2 209 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 LYSMD4Q5XG99 296 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 SLC23A3Q6PIS1 610 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 SLC36A4Q6YBV0 504 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 HTR3DQ70Z44 454 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 RABEPKQ7Z6M1 372 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 BBS7Q8IWZ6 715 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 TMEFF1Q8IYR6 380 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 CEP57L1Q8IYX8 460 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 TMC2Q8TDI7 906 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 RLN3Q8WXF3 142 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 SMOQ99835 787 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 NACA2Q9H009 215 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 SDCBP2Q9H190 292 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 TLR8Q9NR97 1041 aaKnown RBP13.6□□□□□ -0.23
PTCH1-218ENST00000548945 KRT82Q9NSB4 513 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 GMIPQ9P107 970 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 MBD1Q9UIS9 605 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-218ENST00000548945 PCDHA7Q9UN72 937 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 ADAMTS9Q9P2N4 1935 aa13.6□□□□□ -0.23
PTCH1-218ENST00000548945 UPK3BL1B0FP48 263 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 UPK3BL2E5RIL1 263 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 PDXKO00764 312 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 IKBKBO14920 756 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 KLRC4O43908 158 aa13.59□□□□□ -0.23
PTCH1-218ENST00000548945 TLR5O60602 858 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms