RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 AGPAT1Q99943 283 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 PAIP2Q9BPZ3 127 aaKnown RBP8.95□□□□□ -0.98
VPS29-203ENST00000546588 ZNF518BQ9C0D4 1074 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 LACRTQ9GZZ8 138 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 DEF6Q9H4E7 631 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 CISHQ9NSE2 258 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 TUBGCP4Q9UGJ1 667 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 HES2Q9Y543 173 aa8.95□□□□□ -0.98
VPS29-203ENST00000546588 ARL5CA6NH57 179 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 VGLL3A8MV65 326 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 CYP26A1O43174 497 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 HSPA1AP0DMV8 641 aaKnown RBP8.94□□□□□ -0.98
VPS29-203ENST00000546588 HSPA1BP0DMV9 641 aaKnown RBP8.94□□□□□ -0.98
VPS29-203ENST00000546588 ITGA4P13612 1032 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 AKAP5P24588 427 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 POLR2BP30876 1174 aaKnown RBP8.94□□□□□ -0.98
VPS29-203ENST00000546588 RPL9P32969 192 aaKnown RBP8.94□□□□□ -0.98
VPS29-203ENST00000546588 RPS26P62854 115 aaKnown RBP8.94□□□□□ -0.98
VPS29-203ENST00000546588 MYO1EQ12965 1108 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 SERINC3Q13530 473 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 SEPT6Q14141 434 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 ARHGAP44Q17R89 818 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.94□□□□□ -0.98
VPS29-203ENST00000546588 SYT9Q86SS6 491 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 SLC47A2Q86VL8 602 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 PALB2Q86YC2 1186 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 TRIM42Q8IWZ5 723 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 RBBP8NLQ8NC74 664 aaPredicted RBP8.94□□□□□ -0.98
VPS29-203ENST00000546588 HPDLQ96IR7 371 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 VCPIP1Q96JH7 1222 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 SDCBP2Q9H190 292 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 WNT8AQ9H1J5 351 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 LHX5Q9H2C1 402 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 CLEC4MQ9H2X3 399 aaPredicted RBP8.94□□□□□ -0.98
VPS29-203ENST00000546588 L2HGDHQ9H9P8 463 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 RSAD1Q9HA92 442 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 PRDM6Q9NQX0 595 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 TMEM161AQ9NX61 479 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 SIRPGQ9P1W8 387 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 KIAA1257Q9ULG3 409 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 MYO16Q9Y6X6 1858 aa8.94□□□□□ -0.98
VPS29-203ENST00000546588 A0A0U1RQJ8 604 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 MEIS3P2A8K0S8 358 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 GABRDO14764 452 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 KIAA0355O15063 1070 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 SIN3BO75182 1162 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 RTN2O75298 545 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 CYP11A1P05108 521 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 THP07101 528 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 MLH1P40692 756 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 MAGEA1P43355 309 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 TAF6P49848 677 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 LBX1P52954 281 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 TERF1P54274 439 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 RAD23BP54727 409 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 NOMO3P69849 1222 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 AMPD2Q01433 879 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 CYP27A1Q02318 531 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 PCDH1Q08174 1060 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 KIF5AQ12840 1032 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 TUSC3Q13454 348 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 STILQ15468 1287 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 PCSK7Q16549 785 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 UPP1Q16831 310 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 CLEC16AQ2KHT3 1053 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 WDR72Q3MJ13 1102 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 SV2CQ496J9 727 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 ARHGAP29Q52LW3 1261 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 TMEM270Q6UE05 265 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 SLFN11Q7Z7L1 901 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 FAM35AQ86V20 835 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 PHF13Q86YI8 300 aaPredicted RBP8.93□□□□□ -0.98
VPS29-203ENST00000546588 SLC4A11Q8NBS3 891 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 TRIM58Q8NG06 486 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 SLC20A1Q8WUM9 679 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 KBTBD7Q8WVZ9 684 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 ATRIPQ8WXE1 791 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 RFFLQ8WZ73 363 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 C18orf25Q96B23 403 aaPredicted RBP8.93□□□□□ -0.98
VPS29-203ENST00000546588 C16orf45Q96MC5 204 aaPredicted RBP8.93□□□□□ -0.98
VPS29-203ENST00000546588 PCDHB18PQ96TA0 734 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 ADAM2Q99965 735 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 ZSWIM1Q9BR11 485 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 C11orf49Q9H6J7 331 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 RC3H2Q9HBD1 1191 aaKnown RBP8.93□□□□□ -0.98
VPS29-203ENST00000546588 TPSG1Q9NRR2 321 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 TRMT1Q9NXH9 659 aaKnown RBP8.93□□□□□ -0.98
VPS29-203ENST00000546588 PRKAG3Q9UGI9 489 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 GTF3C4Q9UKN8 822 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 BARX2Q9UMQ3 279 aaPredicted RBP8.93□□□□□ -0.98
VPS29-203ENST00000546588 AGAP1Q9UPQ3 857 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 PAXBP1Q9Y5B6 917 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 COMMD10Q9Y6G5 202 aa8.93□□□□□ -0.98
VPS29-203ENST00000546588 ZNF638Q14966 1978 aaKnown RBP8.93□□□□□ -0.98
VPS29-203ENST00000546588 GBF1Q92538 1859 aa8.92□□□□□ -0.98
VPS29-203ENST00000546588 TCRBV5S1A1TA0A578 114 aa8.92□□□□□ -0.98
VPS29-203ENST00000546588 DCDC2CA8MYV0 355 aa8.92□□□□□ -0.98
VPS29-203ENST00000546588 KPNA7A9QM74 516 aa8.92□□□□□ -0.98
VPS29-203ENST00000546588 M0QZQ0 153 aa8.92□□□□□ -0.98
VPS29-203ENST00000546588 PPEF2O14830 753 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms