RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 ZNF143P52747 638 aaPredicted RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 SLC18A2Q05940 514 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 KPNB1Q14974 876 aaKnown RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 MDH1BQ5I0G3 518 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 WASHC2DQ5SRD0 308 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 PLD5Q8N7P1 536 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 CCDC110Q8TBZ0 833 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 ZNF398Q8TD17 642 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 NSL1Q96IY1 281 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 PHACTR1Q9C0D0 580 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 TLE6Q9H808 572 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 SLC24A3Q9HC58 644 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 GGA3Q9NZ52 723 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 NR2E3Q9Y5X4 410 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 IGKV6-21A0A0C4DH24 114 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 F5H423 210 aaPredicted RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 COPEO14579 308 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 GYG2O15488 501 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 KIF1CO43896 1103 aaKnown RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 CCDC22O60826 627 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 C1QAP02745 245 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 KITP10721 976 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 STIP1P31948 543 aaKnown RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 CDK16Q00536 496 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 MBTD1Q05BQ5 628 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 KRT81Q14533 505 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 DEFB132Q7Z7B7 95 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 ARMC2Q8NEN0 867 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 SKA1Q96BD8 255 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 RNF157Q96PX1 679 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 TRIM6Q9C030 488 aaPredicted RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 NMUR2Q9GZQ4 415 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 NGRNQ9NPE2 291 aaKnown RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 TAS2R1Q9NYW7 299 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 MARCOQ9UEW3 520 aaPredicted RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 ZC3H7BQ9UGR2 993 aaKnown RBP16.45■□□□□ 0.22
LDLR-204ENST00000545707 TTLL3Q9Y4R7 772 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 LRRC42Q9Y546 428 aa16.45■□□□□ 0.22
LDLR-204ENST00000545707 C2CD4BA6NLJ0 364 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 PRPSAP2O60256 369 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 SMNDC1O75940 238 aaKnown RBP eCLIP16.44■□□□□ 0.22
LDLR-204ENST00000545707 KRT36O76013 467 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 PCK1P35558 622 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 NDST1P52848 882 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 CAND1Q86VP6 1230 aaKnown RBP16.44■□□□□ 0.22
LDLR-204ENST00000545707 ENDOVQ8N8Q3 282 aaKnown RBP16.44■□□□□ 0.22
LDLR-204ENST00000545707 DTX3LQ8TDB6 740 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 WDR60Q8WVS4 1066 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 SPATA33Q96N06 139 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 C2orf40Q9H1Z8 148 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 CNTN3Q9P232 1028 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 FCHO1O14526 889 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 ENDOD1O94919 500 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 ZBTB7AO95365 584 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 GABRB2P47870 512 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 HSF5Q4G112 596 aaPredicted RBP16.44■□□□□ 0.22
LDLR-204ENST00000545707 ACSBG2Q5FVE4 666 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 PPP6R3Q5H9R7 873 aaPredicted RBP16.44■□□□□ 0.22
LDLR-204ENST00000545707 SLC26A11Q86WA9 606 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 FBXO16Q8IX29 292 aaPredicted RBP16.44■□□□□ 0.22
LDLR-204ENST00000545707 PQLC3Q8N755 202 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 FBXO27Q8NI29 283 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 CXorf38Q8TB03 319 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 FAM167AQ96KS9 214 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 CNPY3Q9BT09 278 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 IQCGQ9H095 443 aaKnown RBP16.44■□□□□ 0.22
LDLR-204ENST00000545707 SPATC1LQ9H0A9 340 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 TSPAN16Q9UKR8 245 aa16.44■□□□□ 0.22
LDLR-204ENST00000545707 MGAMO43451 1857 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 TFE3P19532 575 aaPredicted RBP16.43■□□□□ 0.22
LDLR-204ENST00000545707 IRX4P78413 519 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 BLMHQ13867 455 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 SMAD1Q15797 465 aaKnown RBP16.43■□□□□ 0.22
LDLR-204ENST00000545707 CCDC14Q49A88 953 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 ANO7Q6IWH7 933 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 TRMT10BQ6PF06 316 aaKnown RBP16.43■□□□□ 0.22
LDLR-204ENST00000545707 CHSY1Q86X52 802 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 VPS52Q8N1B4 723 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 OXNAD1Q96HP4 312 aaPredicted RBP16.43■□□□□ 0.22
LDLR-204ENST00000545707 HPDLQ96IR7 371 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 RNPEPQ9H4A4 650 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 MTO1Q9Y2Z2 717 aaKnown RBP16.43■□□□□ 0.22
LDLR-204ENST00000545707 SOCS7O14512 581 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 ESRRAP11474 423 aaPredicted RBP16.43■□□□□ 0.22
LDLR-204ENST00000545707 GRIA1P42261 906 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 BCAR1P56945 870 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 MRPS5P82675 430 aaKnown RBP16.43■□□□□ 0.22
LDLR-204ENST00000545707 RCN1Q15293 331 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 TTC39BQ5VTQ0 682 aaPredicted RBP16.43■□□□□ 0.22
LDLR-204ENST00000545707 GADL1Q6ZQY3 521 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 RIOX2Q8IUF8 465 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 SCUBE3Q8IX30 993 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 MPP5Q8N3R9 675 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 PCDH19Q8TAB3 1148 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 MCUR1Q96AQ8 359 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 ACAP3Q96P50 834 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 LPIN3Q9BQK8 851 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 OSBPL1AQ9BXW6 950 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 CXCL16Q9H2A7 254 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 POPDC2Q9HBU9 364 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms