RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TNRC18O15417 2968 aaPredicted RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 EMSYQ7Z589 1322 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 KDM3AQ9Y4C1 1321 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 ADAMTS3O15072 1205 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 GYG2O15488 501 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 ADCY3O60266 1144 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 DUSP11O75319 330 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 ZNF189O75820 626 aaPredicted RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 CAPNS1P04632 268 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 HNRNPCP07910 306 aaKnown RBP eCLIP5.48□□□□□ -1.53
USP28-213ENST00000544967 POLR2MP0CAP2 368 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 NCAM1P13591 858 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 UCHL3P15374 230 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 HOXD12P35452 270 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 ADCY7P51828 1080 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 WDR4P57081 412 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 CDK16Q00536 496 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 KCNC4Q03721 635 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 PTPN11Q06124 597 aaPredicted RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 APOFQ13790 326 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 MPP2Q14168 576 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 INAQ16352 499 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 NDUFA5Q16718 116 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 INF2Q27J81 1249 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 DUSP28Q4G0W2 176 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 TAF1BQ53T94 588 aaPredicted RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 FAM117BQ6P1L5 589 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 UGT2A3Q6UWM9 527 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 PACS1Q6VY07 963 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 KBTBD2Q8IY47 623 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 ETNPPLQ8TBG4 499 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 LRRC15Q8TF66 581 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 FAM172AQ8WUF8 416 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 SPIRE2Q8WWL2 714 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 LARP4BQ92615 738 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 ZNF75CPQ92670 426 aaPredicted RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 MCUR1Q96AQ8 359 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 SNX27Q96L92 541 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 ZSWIM1Q9BR11 485 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 BLOC1S4Q9NUP1 217 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 QPCTLQ9NXS2 382 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 RAB26Q9ULW5 256 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 MYH9P35579 1960 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 HTR3EA5X5Y0 456 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 VILLO15195 856 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 DHX15O43143 795 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 PEX10O60683 326 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 SCGB1D2O95969 90 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 INHAP05111 366 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 C8BP07358 591 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 SMIM18P0DKX4 95 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 GNA11P29992 359 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 STAT1P42224 750 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 NEK2P51955 445 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 NOP14P78316 857 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 CENPCQ03188 943 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 PRPF4BQ13523 1007 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 BMT2Q1RMZ1 405 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 BRDTQ58F21 947 aaPredicted RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 CCDC137Q6PK04 289 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 IZUMO2Q6UXV1 221 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 DSTYKQ6XUX3 929 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 MILR1Q7Z6M3 343 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 C11orf74Q86VG3 221 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 SCUBE1Q8IWY4 988 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 ARL10Q8N8L6 244 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 RDM1Q8NG50 284 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 RAB3IL1Q8TBN0 382 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 NLRP7Q8WX94 980 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 APBB2Q92870 758 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 SLC5A5Q92911 643 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 CD101Q93033 1021 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 ABHD8Q96I13 439 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 TCHPQ9BT92 498 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 TRIM55Q9BYV6 548 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 STN1Q9H668 368 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 USP29Q9HBJ7 922 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 ETNK2Q9NVF9 386 aa5.48□□□□□ -1.53
USP28-213ENST00000544967 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 DBR1Q9UK59 544 aaKnown RBP5.48□□□□□ -1.53
USP28-213ENST00000544967 PRRT4C9JH25 899 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 FSCN2O14926 492 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 KPNA6O60684 536 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 CD48P09326 243 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 BTKQ06187 659 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 ARHGAP1Q07960 439 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 SPIRE1Q08AE8 756 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 PTP4A2Q12974 167 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 BAATQ14032 418 aaPredicted RBP5.47□□□□□ -1.53
USP28-213ENST00000544967 SIX1Q15475 284 aaPredicted RBP5.47□□□□□ -1.53
USP28-213ENST00000544967 NEPROQ6NW34 567 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 PATL1Q86TB9 770 aaKnown RBP5.47□□□□□ -1.53
USP28-213ENST00000544967 SLC15A3Q8IY34 581 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 SLC17A8Q8NDX2 589 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 CFAP57Q96MR6 1250 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 FRMD6Q96NE9 622 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.47□□□□□ -1.53
USP28-213ENST00000544967 KCTD10Q9H3F6 313 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 ERVK-5Q9HDB9 667 aa5.47□□□□□ -1.53
USP28-213ENST00000544967 NGRNQ9NPE2 291 aaKnown RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms