RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 C9orf57Q5W0N0 161 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 ARHGAP17Q68EM7 881 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 UNC93AQ86WB7 457 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 OR6B3Q8NGW1 331 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 PCDH19Q8TAB3 1148 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 NPLOC4Q8TAT6 608 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 STK32AQ8WU08 396 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 DCAKDQ8WVC6 231 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 TBCBQ99426 244 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 OSMRQ99650 979 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 SNRNP25Q9BV90 132 aaKnown RBP18.78■□□□□ 0.6
VIM-209ENST00000544301 B3GNT5Q9BYG0 378 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 DPEP3Q9H4B8 488 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 RNF19AQ9NV58 838 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 CNTN3Q9P232 1028 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 GJD2Q9UKL4 321 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 CHMP2BQ9UQN3 213 aa18.78■□□□□ 0.6
VIM-209ENST00000544301 TGM2P21980 687 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 ELK3P41970 407 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 BCAR1P56945 870 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 CDC42EP1Q00587 391 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 MGAT5Q09328 741 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 DNAJC3Q13217 504 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 PDK4Q16654 411 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 SLC9A4Q6AI14 798 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 PLEKHH3Q7Z736 793 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 GBP7Q8N8V2 638 aaPredicted RBP18.77■□□□□ 0.6
VIM-209ENST00000544301 MZB1Q8WU39 189 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 SPOCK2Q92563 424 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 RTP4Q96DX8 246 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 RMDN2Q96LZ7 410 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 NXF3Q9H4D5 531 aaKnown RBP18.77■□□□□ 0.6
VIM-209ENST00000544301 CHADO15335 359 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 KCNN4O15554 427 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 HCRTO43612 131 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 SMIM10L2AP0DMW4 78 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 SMIM10L2BP0DMW5 78 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 DARSP14868 501 aaKnown RBP18.77■□□□□ 0.6
VIM-209ENST00000544301 MSH2P43246 934 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 HDAC4P56524 1084 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 SNX16P57768 344 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 FAM182AQ5T1J6 154 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 ICE2Q659A1 982 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 RNF43Q68DV7 783 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 VSIG1Q86XK7 387 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 ZDHHC17Q8IUH5 632 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 PARP9Q8IXQ6 854 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 FITM2Q8N6M3 262 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 CCDC63Q8NA47 563 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 FAF2Q96CS3 445 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 RXFP1Q9HBX9 757 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 PAK5Q9P286 719 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 KLHL14Q9P2G3 628 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 STARD13Q9Y3M8 1113 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 HEY1Q9Y5J3 304 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 TEX264Q9Y6I9 313 aa18.77■□□□□ 0.6
VIM-209ENST00000544301 GLTPD2A6NH11 291 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 A8MXQ7 604 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 MDM4O15151 490 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 RECQL4O94761 1208 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 ATP2A2P16615 1042 aaKnown RBP18.76■□□□□ 0.59
VIM-209ENST00000544301 TFE3P19532 575 aaPredicted RBP18.76■□□□□ 0.59
VIM-209ENST00000544301 SYCP2LQ5T4T6 812 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 C7orf31Q8N865 590 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 RAB6BQ9NRW1 208 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 PHTF1Q9UMS5 762 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 NRCAMQ92823 1304 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 SMIM35A0A1B0GVV1 85 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 DYNC1LI2O43237 492 aaPredicted RBP18.76■□□□□ 0.59
VIM-209ENST00000544301 DESP17661 470 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 AKAP5P24588 427 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 RBL1P28749 1068 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 NCALDP61601 193 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 ELF3P78545 371 aaPredicted RBP18.76■□□□□ 0.59
VIM-209ENST00000544301 BNIP1Q12981 228 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 CBLBQ13191 982 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 HHATQ5VTY9 493 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 UPF1Q92900 1129 aaKnown RBP eCLIP18.76■□□□□ 0.59
VIM-209ENST00000544301 CYTH2Q99418 400 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 NCAPGQ9BPX3 1015 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 ZNF670Q9BS34 389 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 APOL6Q9BWW8 343 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 TRIM6Q9C030 488 aaPredicted RBP18.76■□□□□ 0.59
VIM-209ENST00000544301 ECT2Q9H8V3 914 aa18.76■□□□□ 0.59
VIM-209ENST00000544301 BCLAF3A2AJT9 711 aaKnown RBP18.75■□□□□ 0.59
VIM-209ENST00000544301 CFAP69A5D8W1 941 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 A6NJR5 290 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 ZWINTO95229 277 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 F2P00734 622 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 FGFR1P11362 822 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 CYP2C9P11712 490 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 GBP2P32456 591 aaPredicted RBP18.75■□□□□ 0.59
VIM-209ENST00000544301 MNAT1P51948 309 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 PCBP1Q15365 356 aaKnown RBP eCLIP18.75■□□□□ 0.593e-21■■□□□ 13.3
VIM-209ENST00000544301 LVRNQ6Q4G3 990 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 ECHDC2Q86YB7 292 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 LRRC8CQ8TDW0 803 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 CLEC4CQ8WTT0 213 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 KBTBD7Q8WVZ9 684 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 C11orf84Q9BUA3 381 aaPredicted RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms