RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ZDHHC11BP0C7U3 371 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 ITPKAP23677 461 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 EIF2DP41214 584 aaKnown RBP16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 GRIA2P42262 883 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 MAPK8P45983 427 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 DLG4P78352 724 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 BMT2Q1RMZ1 405 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 FOXD4L6Q3SYB3 417 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 DAB2IPQ5VWQ8 1189 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 FOXD4L3Q6VB84 417 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 UNC13DQ70J99 1090 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 GPRIN1Q7Z2K8 1008 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 WHAMMQ8TF30 809 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 ACOX2Q99424 681 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 SMOQ99835 787 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 CD248Q9HCU0 757 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 KRT82Q9NSB4 513 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 IL37Q9NZH6 218 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 ZMIZ1Q9ULJ6 1067 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 UBE4BO95155 1302 aa16.41■□□□□ 0.22
CLSTN3-213ENST00000541953 MYH10P35580 1976 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 PKD1L2Q7Z442 2459 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 E2F8A0AVK6 867 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 SLC9A3R1O14745 358 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 PPP6R2O75170 966 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 TBX18O95935 607 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 ENGP17813 658 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 GABRG2P18507 467 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 PPP3CCP48454 512 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 TRPC3Q13507 836 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 EGFLAMQ63HQ2 1017 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 ACOT1Q86TX2 421 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 C11orf74Q86VG3 221 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 KIAA1958Q8N8K9 716 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 OR2I1PQ8NGU4 316 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 GATA6Q92908 595 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 INTS4Q96HW7 963 aaKnown RBP16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 SLC6A17Q9H1V8 727 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 ZSCAN16Q9H4T2 348 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 OSER1Q9NX31 292 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 EHD2Q9NZN4 543 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 BCCIPQ9P287 314 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 EVLQ9UI08 416 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 FAM208BQ5VWN6 2430 aa16.4■□□□□ 0.22
CLSTN3-213ENST00000541953 ITPR1Q14643 2758 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 A0A1W2PQF6 199 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 FAM92AA1XBS5 289 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 POLR2DO15514 142 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 HOXC11O43248 304 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 C4BPAP04003 597 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 CSRP1P21291 193 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 AFMP43652 599 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 ZNF699Q32M78 642 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 EOGTQ5NDL2 527 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 C10orf76Q5T2E6 689 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 HECTD3Q5T447 861 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 SNX30Q5VWJ9 437 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 PEAR1Q5VY43 1037 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 SPOPLQ6IQ16 392 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 TOGARAM2Q6ZUX3 1019 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 LPCAT2Q7L5N7 544 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 C12orf56Q8IXR9 622 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 ZNF513Q8N8E2 541 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 C12orf29Q8N999 325 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 TERB1Q8NA31 727 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 KIAA0895Q8NCT3 520 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 CCDC26Q8TAB7 109 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 PARD3BQ8TEW8 1205 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 TWNKQ96RR1 684 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 MED10Q9BTT4 135 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 SCNM1Q9BWG6 230 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 ADAM33Q9BZ11 813 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 CUEDC2Q9H467 287 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 VRTNQ9H8Y1 702 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 DMAP1Q9NPF5 467 aaPredicted RBP16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 SPHK2Q9NRA0 654 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 CALCOCO1Q9P1Z2 691 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 PILRBQ9UKJ0 227 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 LOC400499M0QZD8 3231 aa16.39■□□□□ 0.21
CLSTN3-213ENST00000541953 CACNA1GO43497 2377 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 SPAARA0A1B0GVQ0 90 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 MDM4O15151 490 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 KLRC4O43908 158 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 EXOC3O60645 756 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 CUTAO60888 179 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 AP1G2O75843 785 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 ALDH1A2O94788 518 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 RTN3O95197 1032 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 FAM163BP0C2L3 166 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 CEACAM1P13688 526 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 HOXB3P14651 431 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 TNFRSF4P43489 277 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 FAM193AP78312 1265 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 GAD2Q05329 585 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 BIRC3Q13489 604 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 NCOA4Q13772 614 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 ANO4Q32M45 955 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 C1orf220Q5T0J3 134 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 DDX42Q86XP3 938 aaKnown RBP eCLIP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms