RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 PTGS2P35354 604 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 PIK3CAP42336 1068 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 EPS15P42566 896 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 ALDH1A3P47895 512 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 APLP1P51693 650 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 CACNB1Q02641 598 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-214ENST00000540539 BNIP3Q12983 259 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 COG2Q14746 738 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 SLC1A5Q15758 541 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 DNAL1Q4LDG9 190 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 RABGAP1LQ5R372 815 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 PPM1LQ5SGD2 360 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 C6orf52Q5T4I8 152 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 UBE2UQ5VVX9 321 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 FIP1L1Q6UN15 594 aaKnown RBP9.82□□□□□ -0.84
CLIP1-214ENST00000540539 PRUNE1Q86TP1 453 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 SYN2Q92777 582 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-214ENST00000540539 EDEM3Q9BZQ6 932 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 CCSER2Q9H7U1 834 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 PLEKHA5Q9HAU0 1116 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 SCPEP1Q9HB40 452 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 SLC38A10Q9HBR0 1119 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 C8orf4Q9NR00 106 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 VPS45Q9NRW7 570 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 CDC14AQ9UNH5 594 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 POLHQ9Y253 713 aa9.82□□□□□ -0.84
CLIP1-214ENST00000540539 SPEF2Q9C093 1822 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 A0A1W2PPW3 197 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 PCP4L1A6NKN8 68 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 TRIM77I1YAP6 450 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 SNPHO15079 494 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 RHOBTB3O94955 611 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 TTC4O95801 387 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 GABRB3P28472 473 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 RPA3P35244 121 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-214ENST00000540539 NDST2P52849 883 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 GNA12Q03113 381 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 COX10Q12887 443 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 NR1H3Q13133 447 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 CALCOCO2Q13137 446 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 TMED2Q15363 201 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 CRY2Q49AN0 593 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 NDUFAF5Q5TEU4 345 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 NEK5Q6P3R8 708 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 CAND1Q86VP6 1230 aaKnown RBP9.81□□□□□ -0.84
CLIP1-214ENST00000540539 CCDC28AQ8IWP9 274 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 BBOF1Q8ND07 529 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 GRIN3AQ8TCU5 1115 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 ZUFSPQ96AP4 578 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 TMEM120AQ9BXJ8 343 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 DCLK3Q9C098 648 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 VANGL2Q9ULK5 521 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 KLRG2A4D1S0 409 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-214ENST00000540539 hCG_2039718K7EN88 272 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 PRPF4O43172 522 aaKnown RBP eCLIP9.81□□□□□ -0.84
CLIP1-214ENST00000540539 BMP10O95393 424 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 FGAP02671 866 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 ABCB4P21439 1286 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 IRX4P78413 519 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 AMPD3Q01432 767 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 MAN2A1Q16706 1144 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 LRRC24Q50LG9 513 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 FAM83BQ5T0W9 1011 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 FAM91A1Q658Y4 838 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 TTC27Q6P3X3 843 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 LDHAL6AQ6ZMR3 332 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 KBTBD7Q8WVZ9 684 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 MAML1Q92585 1016 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 KCNK13Q9HB14 408 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 DISC1Q9NRI5 854 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 DNMT3BQ9UBC3 853 aaKnown RBP9.81□□□□□ -0.84
CLIP1-214ENST00000540539 PCSK1NQ9UHG2 260 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 GAKO14976 1311 aa9.81□□□□□ -0.84
CLIP1-214ENST00000540539 CAPN14A8MX76 684 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ZNF701M0R085 212 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 EYA2O00167 538 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 PODXLO00592 558 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 GPC4O75487 556 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 NOL4O94818 638 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 CAPN1P07384 714 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ALAS1P13196 640 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 MAGEA4P43358 317 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 KDSRQ06136 332 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 KLHL30Q0D2K2 578 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 C19orf57Q0VDD7 668 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ZNF211Q13398 564 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ZNF174Q15697 407 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ANO4Q32M45 955 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 MDH1BQ5I0G3 518 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 FGD3Q5JSP0 725 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ATAD3BQ5T9A4 648 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 SCARA3Q6AZY7 606 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 PPP4R4Q6NUP7 873 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 IDO2Q6ZQW0 420 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 FRA10AC1Q70Z53 315 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 ATG9AQ7Z3C6 839 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 SETD3Q86TU7 594 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-214ENST00000540539 TRABD2AQ86V40 505 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 TICAM1Q8IUC6 712 aa9.8□□□□□ -0.84
CLIP1-214ENST00000540539 C7orf26Q96N11 449 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms