RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 MFSD14AQ96MC6 490 aa13.45□□□□□ -0.26
MSH6-210ENST00000540021 MMP19Q99542 508 aa13.45□□□□□ -0.26
MSH6-210ENST00000540021 CGRRF1Q99675 332 aa13.45□□□□□ -0.26
MSH6-210ENST00000540021 GORASP1Q9BQQ3 440 aa13.45□□□□□ -0.26
MSH6-210ENST00000540021 BCAP29Q9UHQ4 241 aa13.45□□□□□ -0.26
MSH6-210ENST00000540021 GPC4O75487 556 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 NPTXRO95502 500 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 PRKCBP05771 671 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 STIP1P31948 543 aaKnown RBP13.44□□□□□ -0.26
MSH6-210ENST00000540021 HMGCS2P54868 508 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 TBL3Q12788 808 aaKnown RBP13.44□□□□□ -0.26
MSH6-210ENST00000540021 ITGA9Q13797 1035 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 PLEKHA7Q6IQ23 1121 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 HACE1Q8IYU2 909 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 LRRC43Q8N309 656 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 TTLL6Q8N841 843 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 FAM151AQ8WW52 585 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 TUBGCP5Q96RT8 1024 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 UNKQ9C0B0 810 aaKnown RBP13.44□□□□□ -0.26
MSH6-210ENST00000540021 DRG1Q9Y295 367 aaKnown RBP13.44□□□□□ -0.26
MSH6-210ENST00000540021 KLHL2O95198 593 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 SH3BGRP55822 239 aaPredicted RBP13.44□□□□□ -0.26
MSH6-210ENST00000540021 CRY2Q49AN0 593 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 ANKS1BQ7Z6G8 1248 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 C12orf56Q8IXR9 622 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 PAF1Q8N7H5 531 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 ZNF398Q8TD17 642 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 CMTM5Q96DZ9 223 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 NDNQ99608 321 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 TJP2Q9UDY2 1190 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 BCORQ6W2J9 1755 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 SEC24DO94855 1032 aaPredicted RBP13.44□□□□□ -0.26
MSH6-210ENST00000540021 GNAZP19086 355 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 MMP8P22894 467 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 CDKN2BP42772 138 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 SLC12A2P55011 1212 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 LBRQ14739 615 aaKnown RBP13.44□□□□□ -0.26
MSH6-210ENST00000540021 GALNT15Q8N3T1 639 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 OR6B3Q8NGW1 331 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 EBF4Q9BQW3 602 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 PXMP2Q9NR77 195 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 KLHL8Q9P2G9 620 aaPredicted RBP13.44□□□□□ -0.26
MSH6-210ENST00000540021 AKT3Q9Y243 479 aa13.44□□□□□ -0.26
MSH6-210ENST00000540021 CLPTM1O96005 669 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 TTLL12Q14166 644 aaPredicted RBP13.43□□□□□ -0.26
MSH6-210ENST00000540021 RALGPS1Q5JS13 557 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 CDCA2Q69YH5 1023 aaPredicted RBP13.43□□□□□ -0.26
MSH6-210ENST00000540021 ADGRD1Q6QNK2 874 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 PHF13Q86YI8 300 aaPredicted RBP13.43□□□□□ -0.26
MSH6-210ENST00000540021 BANPQ8N9N5 519 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 STKLD1Q8NE28 680 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 OR6Y1Q8NGX8 325 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 RXFP2Q8WXD0 754 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 GRIP2Q9C0E4 1043 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 EBF3Q9H4W6 596 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 SUDS3Q9H7L9 328 aaPredicted RBP13.43□□□□□ -0.26
MSH6-210ENST00000540021 KCNK4Q9NYG8 393 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 IL1RAPL1Q9NZN1 696 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 AK5Q9Y6K8 562 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 COL4A1P02462 1669 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 PEX1O43933 1283 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 UGT1A9O60656 530 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 SPAG6O75602 509 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 TOP3BO95985 862 aaKnown RBP13.43□□□□□ -0.26
MSH6-210ENST00000540021 FLOT2Q14254 428 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 FAM160B1Q5W0V3 765 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 PDPK2PQ6A1A2 396 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 UGT1A7Q9HAW7 530 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 UGT1A10Q9HAW8 530 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 UGT1A8Q9HAW9 530 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 EPS15L1Q9UBC2 864 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 CLUHO75153 1309 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 ITGB3P05106 788 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 CHRM1P11229 460 aaPredicted RBP13.43□□□□□ -0.26
MSH6-210ENST00000540021 GPD1P21695 349 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 HOXA10P31260 410 aaPredicted RBP13.43□□□□□ -0.26
MSH6-210ENST00000540021 SLC1A6P48664 564 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 RTP1P59025 263 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 VWA5B1Q5TIE3 1220 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 LAYNQ6UX15 382 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 PID1Q7Z2X4 250 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 APLFQ8IW19 511 aaPredicted RBP13.43□□□□□ -0.26
MSH6-210ENST00000540021 EME1Q96AY2 570 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 C17orf75Q9HAS0 396 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 GTSE1Q9NYZ3 720 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 PPM1HQ9ULR3 514 aa13.43□□□□□ -0.26
MSH6-210ENST00000540021 FKBP6O75344 327 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 SUPT3HO75486 399 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 HMGCRP04035 888 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 LCP1P13796 627 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 ADORA2BP29275 332 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 PKNOX1P55347 436 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 STXBP2Q15833 593 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 TMEM63BQ5T3F8 832 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 GLI3P10071 1580 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 TYROBPO43914 113 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 CCNFP41002 786 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 GLRBP48167 497 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 NOVP48745 357 aa13.42□□□□□ -0.26
MSH6-210ENST00000540021 RAB27AP51159 221 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms