RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 COMTP21964 271 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 NSFP46459 744 aaKnown RBP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ZNF132P52740 706 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ZNF699Q32M78 642 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 TRIM72Q6ZMU5 477 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 HFE2Q6ZVN8 426 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 GSPT2Q8IYD1 628 aaKnown RBP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 MCOLN2Q8IZK6 566 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ATAD1Q8NBU5 361 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 ALG3Q92685 438 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 CYFIP2Q96F07 1278 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 TRIM11Q96F44 468 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 AP1M1Q9BXS5 423 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 CARD9Q9H257 536 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 TTC7AQ9ULT0 858 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-208ENST00000537004 SLC27A5Q9Y2P5 690 aa12.57□□□□□ -0.4
CLIP1-208ENST00000537004 KRIT1O00522 736 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 THAP12O43422 761 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 HCRTO43612 131 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 CFHP08603 1231 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 CD58P19256 250 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 TYMPP19971 482 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 HOXA9P31269 272 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 DUSP4Q13115 394 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 CASP8Q14790 479 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 SLC5A9Q2M3M2 681 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 POTEHQ6S545 545 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 NT5DC4Q86YG4 428 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 KLHL7Q8IXQ5 586 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 TCEAL8Q8IYN2 117 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 ZDHHC14Q8IZN3 488 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 UBL4BQ8N7F7 174 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 ING5Q8WYH8 240 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 BTBD6Q96KE9 485 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 ZSWIM1Q9BR11 485 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 RHOBTB2Q9BYZ6 727 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 XYLT2Q9H1B5 865 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 KCNK12Q9HB15 430 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 AFF4Q9UHB7 1163 aaKnown RBP12.56□□□□□ -0.4
CLIP1-208ENST00000537004 INSL5Q9Y5Q6 135 aa12.56□□□□□ -0.4
CLIP1-208ENST00000537004 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-208ENST00000537004 CCDC188H7C350 402 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 XYLBO75191 536 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 FGGP02679 453 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 CYP11A1P05108 521 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 GLI1P08151 1106 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 MYBL1P10243 752 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 FSHRP23945 695 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 ASPAP45381 313 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 NOMO3P69849 1222 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 TWF1Q12792 350 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 CCDC142Q17RM4 750 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 PABPC1LQ4VXU2 614 aaKnown RBP12.55□□□□□ -0.4
CLIP1-208ENST00000537004 TPGS2Q68CL5 300 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 TRIM67Q6ZTA4 783 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 MON1BQ7L1V2 547 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 LRRTM3Q86VH5 581 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 PASD1Q8IV76 773 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 PLCD3Q8N3E9 789 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 AENQ8WTP8 325 aaKnown RBP12.55□□□□□ -0.4
CLIP1-208ENST00000537004 ZNF606Q8WXB4 792 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 AVENQ9NQS1 362 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-208ENST00000537004 CISHQ9NSE2 258 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 SNX9Q9Y5X1 595 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 ARHGEF37A1IGU5 675 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 HEXIM1O94992 359 aaKnown RBP12.55□□□□□ -0.4
CLIP1-208ENST00000537004 PDGFBP01127 241 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-208ENST00000537004 LRG1P02750 347 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 RHOP08100 348 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 LAMP2P13473 410 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 COL9A1P20849 921 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 RRM1P23921 792 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 TNFRSF8P28908 595 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 TNNT3P45378 269 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-208ENST00000537004 MARCKSL1P49006 195 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 RBP5P82980 135 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 GPR17Q13304 367 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 SV2CQ496J9 727 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 SLC39A12Q504Y0 691 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 SCARA5Q6ZMJ2 495 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 IFT20Q8IY31 132 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 KRT35Q92764 455 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 FGF13Q92913 245 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 CD101Q93033 1021 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 TCEAL4Q96EI5 215 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 ZNF560Q96MR9 790 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 CORO1BQ9BR76 489 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 RPP25Q9BUL9 199 aaKnown RBP12.55□□□□□ -0.4
CLIP1-208ENST00000537004 UBXN6Q9BZV1 441 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 ITGA11Q9UKX5 1188 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 SORCS3Q9UPU3 1222 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 MTCL1Q9Y4B5 1905 aaKnown RBP12.55□□□□□ -0.4
CLIP1-208ENST00000537004 MUC6Q6W4X9 2439 aa12.55□□□□□ -0.4
CLIP1-208ENST00000537004 MTMR11A4FU01 709 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 OR6C75A6NL08 312 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 RAD51CO43502 376 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 NARSO43776 548 aaKnown RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 SPOPO43791 374 aa12.54□□□□□ -0.4
CLIP1-208ENST00000537004 ACAT1P24752 427 aaKnown RBP12.54□□□□□ -0.4
CLIP1-208ENST00000537004 CCR2P41597 374 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms