RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 NUDT19A8MXV4 375 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 DCTN3O75935 186 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 BAG3O95817 575 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 FTCDO95954 541 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 CYBBP04839 570 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 OR52Z1P0C646 297 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ACADSP16219 412 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ATP6V1C1P21283 382 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 GNA11P29992 359 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 CTCFP49711 727 aaPredicted RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 NFKB2Q00653 900 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 DR1Q01658 176 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 OCRLQ01968 901 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 RNASELQ05823 741 aaKnown RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 BNIP1Q12981 228 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 CUL3Q13618 768 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 RAPGEF1Q13905 1077 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ARHGAP44Q17R89 818 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 SLC5A9Q2M3M2 681 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 TIGD5Q53EQ6 642 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 FAM133BQ5BKY9 247 aaKnown RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 ANKRD20A2Q5SQ80 823 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 WASHC2DQ5SRD0 308 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ANKRD20A1Q5TYW2 823 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 STRIP1Q5VSL9 837 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ANKRD20A3Q5VUR7 823 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 PAQR3Q6TCH7 311 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 PPP1R21Q6ZMI0 780 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ARHGEF18Q6ZSZ5 1173 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 TRMT10CQ7L0Y3 403 aaKnown RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 GALNT15Q8N3T1 639 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 RASGEF1CQ8N431 466 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 DRAXINQ8NBI3 349 aaPredicted RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 PPFIBP2Q8ND30 876 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ATL2Q8NHH9 583 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 PLEKHO2Q8TD55 490 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 AGAP11Q8TF27 550 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 INPP5DQ92835 1189 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ZNF317Q96PQ6 595 aaPredicted RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 TMEM237Q96Q45 408 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 NAP1L4Q99733 375 aaKnown RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 ARMT1Q9H993 441 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ARHGEF3Q9NR81 526 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 CHCHD3Q9NX63 227 aaKnown RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 NKIRAS1Q9NYS0 192 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 FBXL7Q9UJT9 491 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 HDAC9Q9UKV0 1011 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 MTUS1Q9ULD2 1270 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 ATP8A1Q9Y2Q0 1164 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 LRRC42Q9Y546 428 aa6.98□□□□□ -1.29
USP28-202ENST00000535607 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.98□□□□□ -1.29
USP28-202ENST00000535607 OAS3Q9Y6K5 1087 aaKnown RBP6.98□□□□□ -1.29
USP28-202ENST00000535607 MIF4GDA9UHW6 222 aaKnown RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 F8W031 263 aaPredicted RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 RASGRF2O14827 1237 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 HGSO14964 777 aaPredicted RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 ECE2O60344 883 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 SNX3O60493 162 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 PLEKP08567 350 aaPredicted RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 H2AFZP0C0S5 128 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 MSL3P1P0C860 447 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 CHRNA3P32297 505 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 KLK7P49862 253 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 RAB27AP51159 221 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 GALK1P51570 392 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 ALDH5A1P51649 535 aaPredicted RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 GSTO1P78417 241 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 CAV1Q03135 178 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 STRN3Q13033 797 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 ACVR2BQ13705 512 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 GPR19Q15760 415 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 UAP1Q16222 522 aaPredicted RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 GALNTL6Q49A17 601 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 ACCSLQ4AC99 568 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 TMEM177Q53S58 311 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 MFSD14BQ5SR56 506 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 FAM83BQ5T0W9 1011 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 MFSD5Q6N075 450 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 IRGCQ6NXR0 463 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 MTHFD1LQ6UB35 978 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 H2AFVQ71UI9 128 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 SPATA21Q7Z572 469 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 C11orf74Q86VG3 221 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 DZIP1Q86YF9 867 aaKnown RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 THNSL2Q86YJ6 484 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 TRIM48Q8IWZ4 208 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 LRRC34Q8IZ02 419 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 MYOCDQ8IZQ8 938 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 NLGN4XQ8N0W4 816 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 Q8N1Y9 231 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 ARHGAP24Q8N264 748 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 ANKRD13CQ8N6S4 541 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 UBL4BQ8N7F7 174 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 C4orf32Q8N8J7 132 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 ENAHQ8N8S7 591 aaPredicted RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 MORC4Q8TE76 937 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 JDP2Q8WYK2 163 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 TBC1D5Q92609 795 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 ZBTB10Q96DT7 871 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 SERPINB12Q96P63 405 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms