RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 LSM14BQ9BX40 385 aaKnown RBP15.83■□□□□ 0.12
CPSF1-208ENST00000532560 OSER1Q9NX31 292 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 CLIC5Q9NZA1 410 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 CPQQ9Y646 472 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 PIAS3Q9Y6X2 628 aa15.83■□□□□ 0.12
CPSF1-208ENST00000532560 A0A1W2PQH9 124 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 KANSL1LA0AUZ9 987 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 SHISA7A6NL88 538 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 SMTNL1A8MU46 457 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 LEFTY2O00292 366 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 ZBED1O96006 694 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 UCHL3P15374 230 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 CDK11BP21127 795 aaKnown RBP15.82■□□□□ 0.12
CPSF1-208ENST00000532560 AVPR2P30518 371 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 ADIGQ0VDE8 80 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 PDGFRLQ15198 375 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 PM20D1Q6GTS8 502 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 KLHDC10Q6PID8 442 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 C1orf228Q6PIY5 440 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 APTXQ7Z2E3 356 aaKnown RBP15.82■□□□□ 0.12
CPSF1-208ENST00000532560 SCD5Q86SK9 330 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 SCML4Q8N228 414 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 ARHGAP18Q8N392 663 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 ZNF276Q8N554 614 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 TMEM105Q8N8V8 129 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 PJA1Q8NG27 643 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 SECISBP2LQ93073 1101 aaKnown RBP15.82■□□□□ 0.12
CPSF1-208ENST00000532560 ZFRQ96KR1 1074 aaKnown RBP15.82■□□□□ 0.12
CPSF1-208ENST00000532560 NAA15Q9BXJ9 866 aaKnown RBP15.82■□□□□ 0.12
CPSF1-208ENST00000532560 C8orf33Q9H7E9 229 aaPredicted RBP15.82■□□□□ 0.12
CPSF1-208ENST00000532560 NMUR1Q9HB89 426 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 LRRC4Q9HBW1 653 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 LTB4R2Q9NPC1 389 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 HPS4Q9NQG7 708 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 GKN1Q9NS71 199 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.82■□□□□ 0.12
CPSF1-208ENST00000532560 SMPD4Q9NXE4 827 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 NAGPAQ9UK23 515 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 HCN4Q9Y3Q4 1203 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 DAAM1Q9Y4D1 1078 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 FHOD1Q9Y613 1164 aa15.82■□□□□ 0.12
CPSF1-208ENST00000532560 MAN2B1O00754 1011 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 THAP12O43422 761 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 ATP1A3P13637 1013 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 COL9A1P20849 921 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 USP8P40818 1118 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 TNK2Q07912 1038 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 ITPRIPL2Q3MIP1 535 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 ZSCAN23Q3MJ62 389 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 PMF1Q6P1K2 205 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 ZNF852Q6ZMS4 543 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 TADA2BQ86TJ2 420 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 FAM71AQ8IYT1 594 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 SIX6OS1Q8N1H7 587 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 ZNF606Q8WXB4 792 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 HSFY1Q96LI6 401 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 CDK5RAP1Q96SZ6 601 aaKnown RBP15.81■□□□□ 0.12
CPSF1-208ENST00000532560 OSBPL6Q9BZF3 934 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 ULBP1Q9BZM6 244 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 FOXQ1Q9C009 403 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 NACA2Q9H009 215 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 KCNH6Q9H252 994 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 GANQ9H2C0 597 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 ACP6Q9NPH0 428 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 CNGB3Q9NQW8 809 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 GTSE1Q9NYZ3 720 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 SIK3Q9Y2K2 1263 aa15.81■□□□□ 0.12
CPSF1-208ENST00000532560 MRPS17Q9Y2R5 130 aaKnown RBP15.81■□□□□ 0.12
CPSF1-208ENST00000532560 FOXN3O00409 490 aaPredicted RBP15.8■□□□□ 0.12
CPSF1-208ENST00000532560 STK25O00506 426 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 CAVIN2O95810 425 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 RALAP11233 206 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 RARGP13631 454 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 CTHP32929 405 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 IFNAR2P48551 515 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 RPL34P49207 117 aaKnown RBP15.8■□□□□ 0.12
CPSF1-208ENST00000532560 KPNA1P52294 538 aaPredicted RBP15.8■□□□□ 0.12
CPSF1-208ENST00000532560 NUBP1P53384 320 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 PTK2Q05397 1052 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 RUNX3Q13761 415 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 RAPGEF1Q13905 1077 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 DRAP1Q14919 205 aaPredicted RBP15.8■□□□□ 0.12
CPSF1-208ENST00000532560 IQCB1Q15051 598 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 EML3Q32P44 896 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 TRIM68Q6AZZ1 485 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 BHLHA9Q7RTU4 235 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 RALGPS2Q86X27 583 aaPredicted RBP15.8■□□□□ 0.12
CPSF1-208ENST00000532560 CCDC105Q8IYK2 499 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 TTC16Q8NEE8 873 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 ATP2A3Q93084 1043 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 EBF3Q9H4W6 596 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 DUS2Q9NX74 493 aaKnown RBP15.8■□□□□ 0.12
CPSF1-208ENST00000532560 CFAP97Q9P2B7 532 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 WNT6Q9Y6F9 365 aa15.8■□□□□ 0.12
CPSF1-208ENST00000532560 MIA3Q5JRA6 1907 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 E2F8A0AVK6 867 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 F8VZ95 297 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 SPECC1L-ADORA2AF8WAN1 911 aa15.79■□□□□ 0.12
CPSF1-208ENST00000532560 SLC9A3R1O14745 358 aaPredicted RBP15.79■□□□□ 0.12
CPSF1-208ENST00000532560 PI15O43692 258 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms