RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 OLFML1Q6UWY5 402 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 GIMAP7Q8NHV1 300 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 EMID1Q96A84 441 aaPredicted RBP22.11■■□□□ 1.13
VPS28-205ENST00000526204 PIWIL1Q96J94 861 aaKnown RBP22.11■■□□□ 1.13
VPS28-205ENST00000526204 SLC4A5Q9BY07 1137 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 KLC2Q9H0B6 622 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 MGAMO43451 1857 aa22.11■■□□□ 1.13
VPS28-205ENST00000526204 PIK3R2O00459 728 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 KCNN4O15554 427 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 PIAS1O75925 651 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 WFS1O76024 890 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 IL4RP24394 825 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 SLC6A3Q01959 620 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 KBTBD12Q3ZCT8 623 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 PKDCCQ504Y2 493 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 SLC9A4Q6AI14 798 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 TAPT1Q6NXT6 567 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 SCYL2Q6P3W7 929 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 TMEM110Q86TL2 294 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 SESTD1Q86VW0 696 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 ZDHHC17Q8IUH5 632 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 APOPT1Q96IL0 206 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 L3MBTL3Q96JM7 780 aaPredicted RBP22.1■■□□□ 1.13
VPS28-205ENST00000526204 PLEKHA5Q9HAU0 1116 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 VTA1Q9NP79 307 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 DERAQ9Y315 318 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 GOLGA8RI6L899 631 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 MDM4O15151 490 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 GRAP2O75791 330 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 SLC18A2Q05940 514 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 TTLL12Q14166 644 aaPredicted RBP22.1■■□□□ 1.13
VPS28-205ENST00000526204 RAB6CQ53S08 254 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 APBB1IPQ7Z5R6 666 aaPredicted RBP22.1■■□□□ 1.13
VPS28-205ENST00000526204 CHSY1Q86X52 802 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 C12orf29Q8N999 325 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 FAM172AQ8WUF8 416 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 OPTNQ96CV9 577 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 ZNF670Q9BS34 389 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 RAB6CQ9H0N0 254 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 PCDH18Q9HCL0 1135 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 NGRNQ9NPE2 291 aaKnown RBP22.1■■□□□ 1.13
VPS28-205ENST00000526204 SLC17A7Q9P2U7 560 aa22.1■■□□□ 1.13
VPS28-205ENST00000526204 TRDMT1O14717 391 aaKnown RBP22.09■■□□□ 1.13
VPS28-205ENST00000526204 HNRNPCL1O60812 293 aaKnown RBP22.09■■□□□ 1.13
VPS28-205ENST00000526204 ZBED1O96006 694 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 MAGEA6P43360 314 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 DCAF4L1Q3SXM0 396 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 PPP1R26Q5T8A7 1209 aaPredicted RBP22.09■■□□□ 1.13
VPS28-205ENST00000526204 PMF1Q6P1K2 205 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 NLRP9Q7RTR0 991 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 ZNF410Q86VK4 478 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 SLC26A11Q86WA9 606 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 PQLC3Q8N755 202 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 STK32AQ8WU08 396 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 NPHS2Q9NP85 383 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 NOP53Q9NZM5 478 aaKnown RBP22.09■■□□□ 1.13
VPS28-205ENST00000526204 HESX1Q9UBX0 185 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 FAM155BO75949 473 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 TOMM70O94826 608 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 DHRS4L1P0CG22 281 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 RGS7P49802 495 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 NEK3P51956 506 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 GJC2Q5T442 439 aaPredicted RBP22.09■■□□□ 1.13
VPS28-205ENST00000526204 APBB2Q92870 758 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 UPF1Q92900 1129 aaKnown RBP eCLIP22.09■■□□□ 1.13
VPS28-205ENST00000526204 LRRC39Q96DD0 335 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 KLF6Q99612 283 aaPredicted RBP22.09■■□□□ 1.13
VPS28-205ENST00000526204 SAR1AQ9NR31 198 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 HEY1Q9Y5J3 304 aa22.09■■□□□ 1.13
VPS28-205ENST00000526204 ZSWIM8A7E2V4 1837 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 RBM47A0AV96 593 aaKnown RBP22.08■■□□□ 1.13
VPS28-205ENST00000526204 WDR91A4D1P6 747 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 TRAFD1O14545 582 aaPredicted RBP22.08■■□□□ 1.13
VPS28-205ENST00000526204 GSTA2P09210 222 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 TARSP26639 723 aaKnown RBP22.08■■□□□ 1.13
VPS28-205ENST00000526204 FAAP100Q0VG06 881 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 LGSNQ5TDP6 509 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 TTC39BQ5VTQ0 682 aaPredicted RBP22.08■■□□□ 1.13
VPS28-205ENST00000526204 MOB2Q70IA6 237 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 PCDH19Q8TAB3 1148 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 GTF3C2Q8WUA4 911 aaPredicted RBP22.08■■□□□ 1.13
VPS28-205ENST00000526204 SLC35F5Q8WV83 523 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 C16orf70Q9BSU1 422 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 TRIM55Q9BYV6 548 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 ZFP69BQ9UJL9 534 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 HAO1Q9UJM8 370 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 ZNF180Q9UJW8 692 aa22.08■■□□□ 1.13
VPS28-205ENST00000526204 RBL1P28749 1068 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 ETV4P43268 484 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 YWHAZP63104 245 aaKnown RBP22.07■■□□□ 1.12
VPS28-205ENST00000526204 SH2D5Q6ZV89 423 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 TTC30AQ86WT1 665 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 STAMBPL1Q96FJ0 436 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 SERAC1Q96JX3 654 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 MYCBPQ99417 103 aaPredicted RBP22.07■■□□□ 1.12
VPS28-205ENST00000526204 SNRNP25Q9BV90 132 aaKnown RBP22.07■■□□□ 1.12
VPS28-205ENST00000526204 EVPLQ92817 2033 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 H3BRB1 525 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 KRT37O76014 449 aa22.07■■□□□ 1.12
VPS28-205ENST00000526204 TGDSO95455 350 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms