RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 YTHDF3Q7Z739 585 aaKnown RBP4.84□□□□□ -1.63
CD44-217ENST00000525348 NEK8Q86SG6 692 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 LINC01465Q8N7H1 131 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 C11orf44Q8N8P7 122 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 STRBPQ96SI9 672 aaKnown RBP4.84□□□□□ -1.63
CD44-217ENST00000525348 BRIP1Q9BX63 1249 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 C1QTNF7Q9BXJ2 289 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 UNKQ9C0B0 810 aaKnown RBP4.84□□□□□ -1.63
CD44-217ENST00000525348 RNF7Q9UBF6 113 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 ZNF70Q9UC06 446 aaPredicted RBP4.84□□□□□ -1.63
CD44-217ENST00000525348 ZNF212Q9UDV6 495 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 FAM50BQ9Y247 325 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 SNX13Q9Y5W8 968 aa4.84□□□□□ -1.63
CD44-217ENST00000525348 AQP7P3A6NL99 342 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 RHPN2P1A8MT19 583 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 POC1B-GALNT4F8VUJ3 575 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 M0R3H8 397 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 KPNA5O15131 536 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 TUBB4AP04350 444 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 ANXA2P07355 339 aaKnown RBP4.83□□□□□ -1.64
CD44-217ENST00000525348 CYP2A6P11509 494 aaPredicted RBP4.83□□□□□ -1.64
CD44-217ENST00000525348 CDK4P11802 303 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 CREB1P16220 341 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 HTR7P34969 479 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 MTHFSP49914 203 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 SUMO2P61956 95 aaKnown RBP4.83□□□□□ -1.64
CD44-217ENST00000525348 ZNF543Q08ER8 600 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 EZH2Q15910 746 aaKnown RBP4.83□□□□□ -1.64
CD44-217ENST00000525348 FAM187BQ17R55 369 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 MTX3Q5HYI7 312 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 KIAA1614Q5VZ46 1190 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 RRAGBQ5VZM2 374 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 SERPINA13PQ6UXR4 307 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 RAB11FIP4Q86YS3 637 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 GALNT4Q8N4A0 578 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 RNF152Q8N8N0 203 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 TTC17Q96AE7 1141 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 FAM83DQ9H4H8 585 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 TRIM36Q9NQ86 728 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 GJB4Q9NTQ9 266 aa4.83□□□□□ -1.64
CD44-217ENST00000525348 ZNF804BA4D1E1 1349 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 SMIM35A0A1B0GVV1 85 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 APAF1O14727 1248 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 TP73O15350 636 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 IL18RAPO95256 599 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 TSHRP16473 764 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 ATF7P17544 494 aaPredicted RBP4.82□□□□□ -1.64
CD44-217ENST00000525348 RPL17P18621 184 aaKnown RBP4.82□□□□□ -1.64
CD44-217ENST00000525348 CERS1P27544 350 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 ARHGAP25P42331 645 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 ZNF81P51508 661 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 CASP5P51878 434 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 COPB1P53618 953 aaKnown RBP4.82□□□□□ -1.64
CD44-217ENST00000525348 KLF9Q13886 244 aaPredicted RBP4.82□□□□□ -1.64
CD44-217ENST00000525348 SLC18B1Q6NT16 456 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 SLC2A7Q6PXP3 512 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 CLEC9AQ6UXN8 241 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 LIX1LQ8IVB5 337 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 UBE2Q2Q8WVN8 375 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 KAZALD1Q96I82 304 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 C8orf48Q96LL4 319 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 HIST1H2AAQ96QV6 131 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 SLC29A3Q9BZD2 475 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 SEMA4CQ9C0C4 833 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 DNAJB11Q9UBS4 358 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 HPSEQ9Y251 543 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 SLC27A6Q9Y2P4 619 aa4.82□□□□□ -1.64
CD44-217ENST00000525348 INMTO95050 263 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 MT-CO3P00414 261 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 CHRM5P08912 532 aaPredicted RBP4.81□□□□□ -1.64
CD44-217ENST00000525348 KELP23276 732 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 COPAP53621 1224 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 KRTAP1-1Q07627 177 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 SEC23BQ15437 767 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 COBLL1Q53SF7 1204 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 PAPD7Q5XG87 772 aaKnown RBP4.81□□□□□ -1.64
CD44-217ENST00000525348 GRHL2Q6ISB3 625 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 RNF44Q7L0R7 432 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 GALNT16Q8N428 558 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 MAFAQ8NHW3 353 aaPredicted RBP4.81□□□□□ -1.64
CD44-217ENST00000525348 PNISRQ8TF01 805 aaKnown RBP4.81□□□□□ -1.64
CD44-217ENST00000525348 EDC3Q96F86 508 aaKnown RBP4.81□□□□□ -1.64
CD44-217ENST00000525348 ZC3H10Q96K80 434 aaKnown RBP4.81□□□□□ -1.64
CD44-217ENST00000525348 SARGQ9BW04 601 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 KLHL13Q9P2N7 655 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 MGAT4CQ9UBM8 478 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 BTBD3Q9Y2F9 522 aa4.81□□□□□ -1.64
CD44-217ENST00000525348 POM121BA6NF01 834 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 PMM2O15305 246 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 USP1O94782 785 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 PRIM2P49643 509 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 MTAPQ13126 283 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 LARS2Q15031 903 aaKnown RBP4.8□□□□□ -1.64
CD44-217ENST00000525348 DAZAP2Q15038 168 aaPredicted RBP4.8□□□□□ -1.64
CD44-217ENST00000525348 LRCH2Q5VUJ6 765 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 ZNF425Q6IV72 752 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 ZNF398Q8TD17 642 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 ADAMTS18Q8TE60 1221 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 SMCR8Q8TEV9 937 aaPredicted RBP4.8□□□□□ -1.64
CD44-217ENST00000525348 IPCEF1Q8WWN9 437 aaPredicted RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms