RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 UBR7Q8N806 425 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 EHBP1Q8NDI1 1231 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 ATRIPQ8WXE1 791 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 CD101Q93033 1021 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 ATP2A3Q93084 1043 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 P2RY13Q9BPV8 354 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 KLF16Q9BXK1 252 aaPredicted RBP9.87□□□□□ -0.83
HDAC3-215ENST00000519474 FAM126AQ9BYI3 521 aaPredicted RBP9.87□□□□□ -0.83
HDAC3-215ENST00000519474 FBXO44Q9H4M3 255 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 FAM124BQ9H5Z6 455 aaPredicted RBP9.87□□□□□ -0.83
HDAC3-215ENST00000519474 NMUR1Q9HB89 426 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 POLR3BQ9NW08 1133 aaPredicted RBP9.87□□□□□ -0.83
HDAC3-215ENST00000519474 CFAP97Q9P2B7 532 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 PCDHGA2Q9Y5H1 932 aa9.87□□□□□ -0.83
HDAC3-215ENST00000519474 ATG2BQ96BY7 2078 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 A0A0A0MRY4 1105 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 E2F8A0AVK6 867 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 BICDL2A1A5D9 508 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 CHURC1-FNTBB4DL54 471 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 SCAMP3O14828 347 aaKnown RBP9.86□□□□□ -0.83
HDAC3-215ENST00000519474 GREM1O60565 184 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 PAPSS2O95340 614 aaPredicted RBP9.86□□□□□ -0.83
HDAC3-215ENST00000519474 DRD1P21728 446 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 HOXA6P31267 233 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 ATP5C1P36542 298 aaKnown RBP9.86□□□□□ -0.83
HDAC3-215ENST00000519474 ANP32AP39687 249 aaKnown RBP9.86□□□□□ -0.83
HDAC3-215ENST00000519474 TUBP50607 506 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 NRLP54845 237 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 MARSP56192 900 aaKnown RBP9.86□□□□□ -0.83
HDAC3-215ENST00000519474 KCNH2Q12809 1159 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 CUL2Q13617 745 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 RAB41Q5JT25 222 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 ZC3H14Q6PJT7 736 aaKnown RBP9.86□□□□□ -0.83
HDAC3-215ENST00000519474 HTR3DQ70Z44 454 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 TRIM59Q8IWR1 403 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 FANCMQ8IYD8 2048 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 ZNF276Q8N554 614 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 DCLK2Q8N568 766 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 TRIML1Q8N9V2 468 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 ANKRD52Q8NB46 1076 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 JAKMIP2Q96AA8 810 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 PNPLA8Q9NP80 782 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 TLR8Q9NR97 1041 aaKnown RBP9.86□□□□□ -0.83
HDAC3-215ENST00000519474 NUDT5Q9UKK9 219 aa9.86□□□□□ -0.83
HDAC3-215ENST00000519474 A0A1W2PQH9 124 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 K7EQS6 105 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 TULP2O00295 520 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 SLC9A3R1O14745 358 aaPredicted RBP9.85□□□□□ -0.83
HDAC3-215ENST00000519474 P4HA2O15460 535 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 TLR5O60602 858 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 GABBR2O75899 941 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 NFATC1O95644 943 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 CYP17A1P05093 508 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 VDRP11473 427 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 RARGP13631 454 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 TRIM21P19474 475 aaKnown RBP9.85□□□□□ -0.83
HDAC3-215ENST00000519474 PLA2G4AP47712 749 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 FNTBP49356 437 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 MESP2Q0VG99 397 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 PAK1Q13153 545 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 CCDC40Q4G0X9 1142 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 PKDCCQ504Y2 493 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 PM20D1Q6GTS8 502 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 CLEC17AQ6ZS10 378 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 PIGZQ86VD9 579 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 TTC30AQ86WT1 665 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 DDX42Q86XP3 938 aaKnown RBP eCLIP9.85□□□□□ -0.83
HDAC3-215ENST00000519474 IRF2BP1Q8IU81 584 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 TFAP2BQ92481 460 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 KAT5Q92993 513 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 ZSWIM1Q9BR11 485 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 CYLDQ9NQC7 956 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.85□□□□□ -0.83
HDAC3-215ENST00000519474 TBC1D14Q9P2M4 693 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 KIAA1257Q9ULG3 409 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 CTNND2Q9UQB3 1225 aa9.85□□□□□ -0.83
HDAC3-215ENST00000519474 PATJQ8NI35 1801 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 MYOFQ9NZM1 2061 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 PTPRZ1P23471 2315 aaPredicted RBP9.84□□□□□ -0.83
HDAC3-215ENST00000519474 MDM4O15151 490 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 CYP26A1O43174 497 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 ATG13O75143 517 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 RNF40O75150 1001 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 GNA14O95837 355 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 PPP2R5DQ14738 602 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 CNGA2Q16280 664 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 FBXO43Q4G163 708 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 SGO2Q562F6 1265 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 LY6G5CQ5SRR4 150 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 EMC10Q5UCC4 262 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 HEATR6Q6AI08 1181 aaKnown RBP9.84□□□□□ -0.83
HDAC3-215ENST00000519474 KLHDC10Q6PID8 442 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 RRAGAQ7L523 313 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 CCDC186Q7Z3E2 898 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 LONP2Q86WA8 852 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 C12orf40Q86WS4 652 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 TMEM25Q86YD3 366 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 ARHGEF19Q8IW93 802 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 SFTPA1Q8IWL2 248 aa9.84□□□□□ -0.83
HDAC3-215ENST00000519474 BBS7Q8IWZ6 715 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms