RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 AP3M2P53677 418 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 ALDH18A1P54886 795 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 HSF5Q4G112 596 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 ZC3H12AQ5D1E8 599 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 TRMT10BQ6PF06 316 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 NUDCD3Q8IVD9 361 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 CFAP61Q8NHU2 1237 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 E2F7Q96AV8 911 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 ANKRD36BP1Q96IX9 119 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 TUBB6Q9BUF5 446 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 RSAD1Q9HA92 442 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 SMYD2Q9NRG4 433 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 PCMTD2Q9NV79 361 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 DOCK5Q9H7D0 1870 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 LIN7AO14910 233 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 MICAL2O94851 1124 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 SNRPAP09012 282 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 RARBP10826 455 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 ACADSP16219 412 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 HMGB2P26583 209 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 STIP1P31948 543 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 TCF7P36402 384 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 AQP5P55064 265 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 KRT81Q14533 505 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 PPP6R3Q5H9R7 873 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 CHSY1Q86X52 802 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 NDUFAF2Q8N183 169 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 PPFIBP2Q8ND30 876 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 RBM15BQ8NDT2 890 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 NIFKQ9BYG3 293 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 ELOVL4Q9GZR5 314 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 CNTN3Q9P232 1028 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 HACL1Q9UJ83 578 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 KRT37O76014 449 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 YWHAZP63104 245 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 PTPN11Q06124 597 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 TARBP2Q15633 366 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 LY6KQ17RY6 165 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 TRNP1Q6NT89 227 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 ZBTB8OSQ8IWT0 167 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 TEKT4Q8WW24 435 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 SPATS2LQ9NUQ6 558 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 GJA3Q9Y6H8 435 aa9.63□□□□□ -0.87
LIMCH1-215ENST00000512632 MED7O43513 233 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 ITGB3P05106 788 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 NFICP08651 508 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 SKIP12755 728 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 NOMO1Q15155 1222 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 SPDYAQ5MJ70 313 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 SLC4A11Q8NBS3 891 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 C20orf27Q9GZN8 174 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 ASNSD1Q9NWL6 643 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 SIX4Q9UIU6 781 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 ZBED1O96006 694 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 HMGCRP04035 888 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 SP100P23497 879 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 BCAR1P56945 870 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 IRX1P78414 480 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 TAZQ16635 292 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 TTC39BQ5VTQ0 682 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 C16orf46Q6P387 395 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 KBTBD2Q8IY47 623 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 FNIP1Q8TF40 1166 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 JDP2Q8WYK2 163 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 MMP19Q99542 508 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 TSC22D3Q99576 134 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 MAGEB5Q9BZ81 275 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 USP29Q9HBJ7 922 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 PIH1D1Q9NWS0 290 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 RPL26L1Q9UNX3 145 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 DCAF8L1A6NGE4 600 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 PRPSAP2O60256 369 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 MAFO75444 373 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 TGDSO95455 350 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 UBTFL6P0CB48 400 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 CSH1P0DML2 217 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 CSH2P0DML3 217 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 GRIA1P42261 906 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 EFNA5P52803 228 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 KCNJ11Q14654 390 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 PPP1R14CQ8TAE6 165 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 SHKBP1Q8TBC3 707 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 EBF4Q9BQW3 602 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 SHCBP1LQ9BZQ2 653 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 LHX5Q9H2C1 402 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 PLLPQ9Y342 182 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 TTLL3Q9Y4R7 772 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 DNAJC6O75061 913 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 FARP2O94887 1054 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 CHRM1P11229 460 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 ATF7IP2Q5U623 682 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 UNC5BQ8IZJ1 945 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 PLD5Q8N7P1 536 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 C1orf127Q8N9H9 656 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 PHC3Q8NDX5 983 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 RNF157Q96PX1 679 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 ARHGEF4Q9NR80 690 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 LRCH1Q9Y2L9 728 aa9.62□□□□□ -0.87
LIMCH1-215ENST00000512632 PRR5-ARHGAP8B1AHC4 643 aa9.61□□□□□ -0.87
LIMCH1-215ENST00000512632 USP1O94782 785 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms