RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ECM1Q16610 540 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 PRR23BQ6ZRT6 265 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 BTLAQ7Z6A9 289 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 NEK8Q86SG6 692 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 CRLF3Q8IUI8 442 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 FBXW8Q8N3Y1 598 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 ZCCHC9Q8N567 271 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 BBOF1Q8ND07 529 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 OLIG1Q8TAK6 271 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 MED30Q96HR3 178 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 COG8Q96MW5 612 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 PKP2Q99959 881 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 CCDC177Q9NQR7 707 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 IKBKGQ9Y6K9 419 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 FER1L4A9Z1Z3 1794 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 FMN2Q9NZ56 1722 aa12.48□□□□□ -0.41
LIMCH1-213ENST00000511496 CLOCKO15516 846 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 NAPAP54920 295 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ALCAMQ13740 583 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 CHI3L2Q15782 390 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ZBED5Q49AG3 693 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 SCARA3Q6AZY7 606 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ANKRD26P1Q6NSI1 321 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 PGM2L1Q6PCE3 622 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 KIF6Q6ZMV9 814 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ZCCHC23Q6ZST2 131 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 DSG4Q86SJ6 1040 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ZC3H7AQ8IWR0 971 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ZNF786Q8N393 782 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 GLIS1Q8NBF1 620 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ZNF564Q8TBZ8 553 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 AGPAT1Q99943 283 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 C17orf80Q9BSJ5 609 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 FRMD8Q9BZ67 464 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 WNK3Q9BYP7 1800 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 MYO3BQ8WXR4 1341 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 NFAT5O94916 1531 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 H3BNH8 94 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 FOXN3O00409 490 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 TSPAN9O75954 239 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 KCNH1O95259 989 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 SERPINA6P08185 405 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 INHBBP09529 407 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 CYP7A1P22680 504 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ZFYVE27Q5T4F4 411 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 LYSMD3Q7Z3D4 306 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 FRMD5Q7Z6J6 570 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 HEATR4Q86WZ0 1026 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 LILRA2Q8N149 483 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 CATSPER1Q8NEC5 780 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 EGLN2Q96KS0 407 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 SLC24A2Q9UI40 661 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ARHGAP26Q9UNA1 814 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 SPEF1Q9Y4P9 236 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 GOLGA8IPA6NC78 632 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 CFLARO15519 480 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ENPP1P22413 925 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 EPHA3P29320 983 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ACADSBP45954 432 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 CYP2U1Q7Z449 544 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ANKS1BQ7Z6G8 1248 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 SYNE4Q8N205 404 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 CCDC33Q8N5R6 958 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 ZSWIM2Q8NEG5 633 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 TRUB1Q8WWH5 349 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 SLCO2A1Q92959 643 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 C2orf49Q9BVC5 232 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 PARVGQ9HBI0 331 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 VAT1LQ9HCJ6 419 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 KDM3BQ7LBC6 1761 aa12.47□□□□□ -0.41
LIMCH1-213ENST00000511496 C7orf72A4D263 438 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 TBKBP1A7MCY6 615 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 CYB561D2O14569 222 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 CSPG5O95196 566 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 ZBTB7AO95365 584 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 ETFBP38117 255 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 GPS1Q13098 491 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 SF3B3Q15393 1217 aaKnown RBP12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 LSM12Q3MHD2 195 aaKnown RBP12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 SYDE1Q6ZW31 735 aaPredicted RBP12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 GPBP1Q86WP2 473 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 ATP6V0D2Q8N8Y2 350 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 TANKQ92844 425 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 SLC35C1Q96A29 364 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 E2F7Q96AV8 911 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 FEM1CQ96JP0 617 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 CALN1Q9BXU9 219 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 SLC13A1Q9BZW2 595 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 C12orf4Q9NQ89 552 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 KLQ9UEF7 1012 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 SPEF2Q9C093 1822 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 LRP6O75581 1613 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 IFNB1P01574 187 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 PTPN1P18031 435 aaKnown RBP12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 BDNFP23560 247 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 MAN1A1P33908 653 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 PHC1P78364 1004 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 FLOT2Q14254 428 aa12.46□□□□□ -0.41
LIMCH1-213ENST00000511496 OXA1LQ15070 435 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms