RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 HELQQ8TDG4 1101 aa11.15□□□□□ -0.63
LIMCH1-205ENST00000503057 GIPC2Q8TF65 315 aa11.15□□□□□ -0.63
LIMCH1-205ENST00000503057 CLEC4DQ8WXI8 215 aa11.15□□□□□ -0.63
LIMCH1-205ENST00000503057 OLFM3Q96PB7 478 aa11.15□□□□□ -0.63
LIMCH1-205ENST00000503057 TMEM120AQ9BXJ8 343 aa11.15□□□□□ -0.63
LIMCH1-205ENST00000503057 RASSF10A6NK89 507 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 HACD1B0YJ81 288 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 E5RI56 91 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 TIMM44O43615 452 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 MTA2O94776 668 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 MAP3K6O95382 1288 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 ALADP13716 330 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 EPHX2P34913 555 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 RGS2P41220 211 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 DGKZQ13574 1117 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 SNX17Q15036 470 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 AP1ARQ63HQ0 302 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 IPMKQ8NFU5 416 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 DTX3LQ8TDB6 740 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 ERVK-5Q9HDB9 667 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 SIPA1L3O60292 1781 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 C4AP0C0L4 1744 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 C4BP0C0L5 1744 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 GEMP55040 296 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 DPYSL3Q14195 570 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 CCDC124Q96CT7 223 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 DDX50Q9BQ39 737 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 KRT82Q9NSB4 513 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 GPR182O15218 404 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 CHADO15335 359 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 CSDE1O75534 798 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 LGALS2P05162 132 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 PTPN4P29074 926 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 MTFR1Q15390 333 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 MTDHQ86UE4 582 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 CTNNAL1Q9UBT7 734 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 KBTBD13C9JR72 458 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 TRDMT1O14717 391 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 NFKBIAP25963 317 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 SSTR1P30872 391 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 VHLP40337 213 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 ZNF143P52747 638 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 PPIL2Q13356 520 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 KDELC2Q7Z4H8 507 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 OR5B17Q8NGF7 314 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 TCP10LQ8TDR4 215 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 COL20A1Q9P218 1284 aa11.14□□□□□ -0.63
LIMCH1-205ENST00000503057 NAV1Q8NEY1 1877 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 hCG_1818297A0A087WSY0 165 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 UBA6A0AVT1 1052 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 NEMP1O14524 444 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 TADA2AO75478 443 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 ASS1P00966 412 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 HOXC6P09630 235 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 BGNP21810 368 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 CHKAP35790 457 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 TNFSF9P41273 254 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 COPAP53621 1224 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 KLC1Q07866 573 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 FAM131BQ86XD5 332 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 COLGALT1Q8NBJ5 622 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 PDCD6IPQ8WUM4 868 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 GPRC5DQ9NZD1 345 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 FZD1Q9UP38 647 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 PMM2O15305 246 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 SLC2A3P11169 496 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 KCNA2P16389 499 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 FLT3P36888 993 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 LRRC39Q96DD0 335 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 OSMRQ99650 979 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 SETD4Q9NVD3 440 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 ARHGAP28Q9P2N2 729 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 DSEQ9UL01 958 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 SLC39A10Q9ULF5 831 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 TJP1Q07157 1748 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 E5RJQ4 531 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 GRK2P25098 689 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 MMP13P45452 471 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 ZNF157P51786 506 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 CACNB2Q08289 660 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 NAB1Q13506 487 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 TIGD7Q6NT04 549 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 GLB1LQ6UWU2 654 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 PACS2Q86VP3 889 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 BSNDQ8WZ55 320 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 MRPL1Q9BYD6 325 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 RRN3Q9NYV6 651 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 STARD13Q9Y3M8 1113 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 COL18A1P39060 1754 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 A0A0B4J269 797 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 KIF1CO43896 1103 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 FARP2O94887 1054 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 DRD4P21917 467 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 ADORA2AP29274 412 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 TRIML2Q8N7C3 387 aa11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 C12orf50Q8NA57 414 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.13□□□□□ -0.63
LIMCH1-205ENST00000503057 ZNF526Q8TF50 670 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms