RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 PAFAH2Q99487 392 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 ZNF670Q9BS34 389 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 KLC4Q9NSK0 619 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 TCRBV7S3A2A0A539 114 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 SLC15A5A6NIM6 579 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 A6NJR5 290 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 ZNF487B1APH4 448 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 PPEF2O14830 753 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 DYNC1LI2O43237 492 aaPredicted RBP11.54□□□□□ -0.56
CMSS1-208ENST00000496116 PAPSS1O43252 624 aaPredicted RBP11.54□□□□□ -0.56
CMSS1-208ENST00000496116 RECQL4O94761 1208 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 ECM2O94769 699 aaPredicted RBP11.54□□□□□ -0.56
CMSS1-208ENST00000496116 ZWINTO95229 277 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 ZBED1O96006 694 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 F2P00734 622 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 KRT4P19013 534 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 PNPLA4P41247 253 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 BCAT1P54687 386 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 WDR4P57081 412 aaKnown RBP11.54□□□□□ -0.56
CMSS1-208ENST00000496116 BST2Q10589 180 aaKnown RBP11.54□□□□□ -0.56
CMSS1-208ENST00000496116 IRF5Q13568 498 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 SEPT7Q16181 437 aaKnown RBP11.54□□□□□ -0.56
CMSS1-208ENST00000496116 GLRA4Q5JXX5 417 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 ALKAL1Q6UXT8 129 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 RGS9BPQ6ZS82 235 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 C4orf33Q8N1A6 199 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 PLD5Q8N7P1 536 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 C7orf31Q8N865 590 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 ALKBH8Q96BT7 664 aaKnown RBP11.54□□□□□ -0.56
CMSS1-208ENST00000496116 CYTH2Q99418 400 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 KIF9Q9HAQ2 790 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 PCDH18Q9HCL0 1135 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 HAUS2Q9NVX0 235 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 IKBKGQ9Y6K9 419 aa11.54□□□□□ -0.56
CMSS1-208ENST00000496116 MBLAC1A4D2B0 266 aaPredicted RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 KCNN4O15554 427 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 ZFXP17010 805 aaPredicted RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 IL4RP24394 825 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 SCNN1AP37088 669 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 PTPN9P43378 593 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 KCNJ11Q14654 390 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 PDK4Q16654 411 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 SOWAHAQ2M3V2 549 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 RAB6CQ53S08 254 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 FAM133BQ5BKY9 247 aaKnown RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 SLC9A4Q6AI14 798 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 C4orf22Q6V702 233 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 ARCQ7LC44 396 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 FUKQ8N0W3 1084 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 ANKRD52Q8NB46 1076 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 NPLOC4Q8TAT6 608 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 C18orf25Q96B23 403 aaPredicted RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 RTP4Q96DX8 246 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 DHRS4Q9BTZ2 278 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 SNRNP25Q9BV90 132 aaKnown RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 KLC2Q9H0B6 622 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 RAB6CQ9H0N0 254 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 CXCL16Q9H2A7 254 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 NXF3Q9H4D5 531 aaKnown RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 CYLDQ9NQC7 956 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 ABCF3Q9NUQ8 709 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 PRKAG3Q9UGI9 489 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 PIN4Q9Y237 131 aaKnown RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 STARD13Q9Y3M8 1113 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 HES2Q9Y543 173 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 HEY1Q9Y5J3 304 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 IQANK1A0A1B0GTG1 560 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 BCLAF3A2AJT9 711 aaKnown RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 CFAP73A6NFT4 308 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 KPNA7A9QM74 516 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 TYROBPO43914 113 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 CAPN15O75808 1086 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 TOMM70O94826 608 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 FOXN2P32314 431 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 RPA3P35244 121 aaPredicted RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 GNL1P36915 607 aaPredicted RBP11.53□□□□□ -0.56
CMSS1-208ENST00000496116 ELK3P41970 407 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 ACADSBP45954 432 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 HHATQ5VTY9 493 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 RNF43Q68DV7 783 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 SLC26A9Q7LBE3 791 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 CRYBG2Q8N1P7 616 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 CCDC63Q8NA47 563 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 LRRC8CQ8TDW0 803 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 SNX25Q9H3E2 840 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 CDHR5Q9HBB8 845 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 RXFP1Q9HBX9 757 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 RAB6BQ9NRW1 208 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 CHMP2BQ9UQN3 213 aa11.53□□□□□ -0.56
CMSS1-208ENST00000496116 PDCD11Q14690 1871 aaKnown RBP11.52□□□□□ -0.56
CMSS1-208ENST00000496116 A0A1W2PPM1 405 aa11.52□□□□□ -0.57
CMSS1-208ENST00000496116 DCAF8L1A6NGE4 600 aa11.52□□□□□ -0.57
CMSS1-208ENST00000496116 PIRO00625 290 aa11.52□□□□□ -0.57
CMSS1-208ENST00000496116 ADCY6O43306 1168 aa11.52□□□□□ -0.57
CMSS1-208ENST00000496116 AKAP5P24588 427 aa11.52□□□□□ -0.57
CMSS1-208ENST00000496116 HDAC4P56524 1084 aa11.52□□□□□ -0.57
CMSS1-208ENST00000496116 MFSD10Q14728 455 aa11.52□□□□□ -0.57
CMSS1-208ENST00000496116 EFTUD2Q15029 972 aaKnown RBP eCLIP11.52□□□□□ -0.57
CMSS1-208ENST00000496116 PPP6R3Q5H9R7 873 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms