RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 FAM3CQ92520 227 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 SECISBP2LQ93073 1101 aaKnown RBP16.77■□□□□ 0.28
LIME1-209ENST00000494776 MSANTD3Q96H12 275 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 NELL2Q99435 816 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 PRRX2Q99811 253 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 EBF3Q9H4W6 596 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 LTB4R2Q9NPC1 389 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 NDRG2Q9UN36 371 aaKnown RBP16.77■□□□□ 0.28
LIME1-209ENST00000494776 WNT6Q9Y6F9 365 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 USP3Q9Y6I4 520 aa16.77■□□□□ 0.28
LIME1-209ENST00000494776 BECN2A8MW95 431 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 NCAM2O15394 837 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 ZBED1O96006 694 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 DCNP07585 359 aaKnown RBP16.76■□□□□ 0.27
LIME1-209ENST00000494776 RARGP13631 454 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 LCP1P13796 627 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 ARSAP15289 507 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 TCF3P15923 654 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 SOX9P48436 509 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 PGFP49763 221 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 RGS7P49802 495 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 ZNF165P49910 485 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 COPB1P53618 953 aaKnown RBP16.76■□□□□ 0.27
LIME1-209ENST00000494776 GOLGA8FQ08AF8 430 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 GOLGA8DPQ0D2H9 430 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 ADIGQ0VDE8 80 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 RAB41Q5JT25 222 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 C10orf120Q5SQS8 335 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 C1orf228Q6PIY5 440 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 CPA6Q8N4T0 437 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 RIN3Q8TB24 985 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 SHC3Q92529 594 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 PCMTD1Q96MG8 357 aaPredicted RBP16.76■□□□□ 0.27
LIME1-209ENST00000494776 CDK5RAP1Q96SZ6 601 aaKnown RBP16.76■□□□□ 0.27
LIME1-209ENST00000494776 FAM83CQ9BQN1 747 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 BPIFA3Q9BQP9 254 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 ZSWIM1Q9BR11 485 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 DDX23Q9BUQ8 820 aaKnown RBP16.76■□□□□ 0.27
LIME1-209ENST00000494776 CFAP97Q9P2B7 532 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 LIMA1Q9UHB6 759 aaKnown RBP16.76■□□□□ 0.27
LIME1-209ENST00000494776 SH3BP1Q9Y3L3 701 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 ANAPC1Q9H1A4 1944 aa16.76■□□□□ 0.27
LIME1-209ENST00000494776 SPECC1L-ADORA2AF8WAN1 911 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 SLC9A3R1O14745 358 aaPredicted RBP16.75■□□□□ 0.27
LIME1-209ENST00000494776 IRF1P10914 325 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 MLLT6P55198 1093 aaPredicted RBP16.75■□□□□ 0.27
LIME1-209ENST00000494776 ZXDBP98169 803 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 AMPD2Q01433 879 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 PTK2Q05397 1052 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 NR1H3Q13133 447 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 NCAPHQ15003 741 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 PKDCCQ504Y2 493 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 KLHDC7AQ5VTJ3 777 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 RSRC2Q7L4I2 434 aaKnown RBP16.75■□□□□ 0.27
LIME1-209ENST00000494776 RALGPS2Q86X27 583 aaPredicted RBP16.75■□□□□ 0.27
LIME1-209ENST00000494776 SLC35F5Q8WV83 523 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 ZNF606Q8WXB4 792 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 KCTD13Q8WZ19 329 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 ATP2A3Q93084 1043 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 ULBP1Q9BZM6 244 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 NMUR1Q9HB89 426 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 CYLDQ9NQC7 956 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 ST7Q9NRC1 585 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.75■□□□□ 0.27
LIME1-209ENST00000494776 OSER1Q9NX31 292 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 DNMT3LQ9UJW3 386 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 AJAP1Q9UKB5 411 aaPredicted RBP16.75■□□□□ 0.27
LIME1-209ENST00000494776 NUDT5Q9UKK9 219 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 MTF2Q9Y483 593 aaPredicted RBP16.75■□□□□ 0.27
LIME1-209ENST00000494776 PATJQ8NI35 1801 aa16.75■□□□□ 0.27
LIME1-209ENST00000494776 TICRRQ7Z2Z1 1910 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 FOXN3O00409 490 aaPredicted RBP16.74■□□□□ 0.27
LIME1-209ENST00000494776 PIK3R2O00459 728 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 SCAMP3O14828 347 aaKnown RBP16.74■□□□□ 0.27
LIME1-209ENST00000494776 TBX18O95935 607 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 TARSP26639 723 aaKnown RBP16.74■□□□□ 0.27
LIME1-209ENST00000494776 CTHP32929 405 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 NUBP1P53384 320 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 YWHAGP61981 247 aaKnown RBP eCLIP16.74■□□□□ 0.27
LIME1-209ENST00000494776 UBXN1Q04323 297 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 DRAP1Q14919 205 aaPredicted RBP16.74■□□□□ 0.27
LIME1-209ENST00000494776 BTBD8Q5XKL5 378 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 PMF1Q6P1K2 205 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 SCD5Q86SK9 330 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 HSFY1Q96LI6 401 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 OSBPL6Q9BZF3 934 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 LINC00597Q9H2U6 94 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 ACP6Q9NPH0 428 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 HPS4Q9NQG7 708 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 CLIC5Q9NZA1 410 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 FHOD1Q9Y613 1164 aa16.74■□□□□ 0.27
LIME1-209ENST00000494776 MYO16Q9Y6X6 1858 aa16.73■□□□□ 0.27
LIME1-209ENST00000494776 NFATC1O95644 943 aa16.73■□□□□ 0.27
LIME1-209ENST00000494776 UCHL3P15374 230 aa16.73■□□□□ 0.27
LIME1-209ENST00000494776 ZNF18P17022 549 aa16.73■□□□□ 0.27
LIME1-209ENST00000494776 KRT9P35527 623 aa16.73■□□□□ 0.27
LIME1-209ENST00000494776 BPIFB4P59827 614 aa16.73■□□□□ 0.27
LIME1-209ENST00000494776 EML3Q32P44 896 aa16.73■□□□□ 0.27
LIME1-209ENST00000494776 SMYD5Q6GMV2 418 aa16.73■□□□□ 0.27
LIME1-209ENST00000494776 PM20D1Q6GTS8 502 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms