RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 USP36Q9P275 1121 aaKnown RBP7.83□□□□□ -1.16
COL9A1-209ENST00000489861 ORC3Q9UBD5 711 aaPredicted RBP7.83□□□□□ -1.16
COL9A1-209ENST00000489861 METRNQ9UJH8 293 aa7.83□□□□□ -1.16
COL9A1-209ENST00000489861 PCDHA12Q9UN75 941 aa7.83□□□□□ -1.16
COL9A1-209ENST00000489861 KIF3AQ9Y496 699 aa7.83□□□□□ -1.16
COL9A1-209ENST00000489861 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.83□□□□□ -1.16
COL9A1-209ENST00000489861 PDZD2O15018 2839 aa7.83□□□□□ -1.16
COL9A1-209ENST00000489861 WASH3PC4AMC7 463 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 ZBTB24O43167 697 aaPredicted RBP7.82□□□□□ -1.16
COL9A1-209ENST00000489861 EFSO43281 561 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 NEMFO60524 1076 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 PFKFB2O60825 505 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 NOL4O94818 638 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 ITGB2P05107 769 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 FAM87AP0C7U9 286 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 CSH1P0DML2 217 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 CSH2P0DML3 217 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 ADH5P11766 374 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 HDCP19113 662 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 MUTP22033 750 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 LRPAP1P30533 357 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 CTSKP43235 329 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 NAMPTP43490 491 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 FOXK1P85037 733 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 SHBQ15464 509 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 NPY5RQ15761 445 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 DDR2Q16832 855 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 ARL13BQ3SXY8 428 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 ZNF568Q3ZCX4 644 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 LY6G5CQ5SRR4 150 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 PIK3AP1Q6ZUJ8 805 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 CHPFQ8IZ52 775 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 COL27A1Q8IZC6 1860 aaPredicted RBP7.82□□□□□ -1.16
COL9A1-209ENST00000489861 DEPTORQ8TB45 409 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 SPPL2BQ8TCT7 592 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 EXTL1Q92935 676 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 VCPIP1Q96JH7 1222 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 SENP8Q96LD8 212 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 NACC1Q96RE7 527 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 ACO2Q99798 780 aaKnown RBP7.82□□□□□ -1.16
COL9A1-209ENST00000489861 MKRN2Q9H000 416 aaKnown RBP7.82□□□□□ -1.16
COL9A1-209ENST00000489861 TM9SF3Q9HD45 589 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 TUFT1Q9NNX1 390 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 ITM2CQ9NQX7 267 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 KCNG1Q9UIX4 513 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 STARD13Q9Y3M8 1113 aa7.82□□□□□ -1.16
COL9A1-209ENST00000489861 RP1P56715 2156 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 A0A1B0GTQ1 180 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 ATMINO43313 823 aaPredicted RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 TULP3O75386 442 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 MT-CO3P00414 261 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 NFICP08651 508 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 PRKCSHP14314 528 aaPredicted RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 PROZP22891 400 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 ELAVL4P26378 380 aaKnown RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 GRIA4P48058 902 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 TPMTP51580 245 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 LILRA4P59901 499 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 ERVPABLB-1P60509 514 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 GABREP78334 506 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 SKOR1P84550 965 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 GNL2Q13823 731 aaKnown RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 KCNB1Q14721 858 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 ZBTB6Q15916 424 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 INAVAQ3KP66 663 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 KRTAP21-3Q3LHN1 58 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 CCDC81Q6ZN84 652 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 METTL3Q86U44 580 aaKnown RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 EID2Q8N6I1 236 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 TERB1Q8NA31 727 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 SNX19Q92543 992 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 TRMT2BQ96GJ1 504 aaKnown RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 MS4A3Q96HJ5 214 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 MYRFLQ96LU7 910 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 MTMR9Q96QG7 549 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 RNF38Q9H0F5 515 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 EPN3Q9H201 632 aa7.81□□□□□ -1.16
COL9A1-209ENST00000489861 UPF2Q9HAU5 1272 aaKnown RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 NOL7Q9UMY1 257 aaKnown RBP7.81□□□□□ -1.16
COL9A1-209ENST00000489861 A0A1W2PNU3 283 aaPredicted RBP7.8□□□□□ -1.16
COL9A1-209ENST00000489861 PRPF40AO75400 957 aaKnown RBP7.8□□□□□ -1.16
COL9A1-209ENST00000489861 ADH1CP00326 375 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 CYP11A1P05108 521 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 MCF2P10911 925 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 ODC1P11926 461 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 HARSP12081 509 aaKnown RBP7.8□□□□□ -1.16
COL9A1-209ENST00000489861 GRIK1P39086 918 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 LSSP48449 732 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 HMGN5P82970 282 aaKnown RBP7.8□□□□□ -1.16
COL9A1-209ENST00000489861 ESPL1Q14674 2120 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 TEAD4Q15561 434 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 SKIDA1Q1XH10 827 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 FUT11Q495W5 492 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 TAS1R3Q7RTX0 852 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 SAP25Q8TEE9 199 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 C2orf15Q8WU43 125 aaKnown RBP7.8□□□□□ -1.16
COL9A1-209ENST00000489861 ZBTB45Q96K62 511 aaPredicted RBP7.8□□□□□ -1.16
COL9A1-209ENST00000489861 IFT74Q96LB3 600 aa7.8□□□□□ -1.16
COL9A1-209ENST00000489861 ZSCAN31Q96LW9 406 aaPredicted RBP7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms