RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SLC25A52Q3SY17 297 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 COL13A1Q5TAT6 717 aaPredicted RBP12.02□□□□□ -0.49
C9orf3-220ENST00000489318 SEL1L2Q5TEA6 688 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 CCDC181Q5TID7 509 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 KIAA1841Q6NSI8 718 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 DEFB106AQ8N104 65 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 TTC9BQ8N6N2 239 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 ATAD1Q8NBU5 361 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 SPATA4Q8NEY3 305 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 ZNF461Q8TAF7 563 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 PGAP3Q96FM1 320 aaPredicted RBP12.02□□□□□ -0.49
C9orf3-220ENST00000489318 MS4A14Q96JA4 679 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 CFAP57Q96MR6 1250 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 TBCBQ99426 244 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 ZBED2Q9BTP6 218 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 PLVAPQ9BX97 442 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 ADAM33Q9BZ11 813 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 DDX56Q9NY93 547 aaKnown RBP12.02□□□□□ -0.49
C9orf3-220ENST00000489318 RRN3Q9NYV6 651 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 EHD2Q9NZN4 543 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 STAP1Q9ULZ2 295 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 USTQ9Y2C2 406 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 SSX2IPQ9Y2D8 614 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 IRAK3Q9Y616 596 aa12.02□□□□□ -0.49
C9orf3-220ENST00000489318 LINC01553A4QN01 128 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 MDM4O15151 490 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 CEP104O60308 925 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 USP17L7P0C7H9 530 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 ATF2P15336 505 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 ATF6P18850 670 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 MIPP30301 263 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 OR1D2P34982 312 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 BMPR1AP36894 532 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 COPS2P61201 443 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 RPL10AP62906 217 aaKnown RBP12.01□□□□□ -0.49
C9orf3-220ENST00000489318 KRT17Q04695 432 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 ZNF211Q13398 564 aaPredicted RBP12.01□□□□□ -0.49
C9orf3-220ENST00000489318 PPP2R5EQ16537 467 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 TAZQ16635 292 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 HADHQ16836 314 aaKnown RBP12.01□□□□□ -0.49
C9orf3-220ENST00000489318 C15orf59Q2T9L4 293 aaPredicted RBP12.01□□□□□ -0.49
C9orf3-220ENST00000489318 TXNRD3NBQ6F5E7 133 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 HFE2Q6ZVN8 426 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 VSIG1Q86XK7 387 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 VPS52Q8N1B4 723 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 NUP93Q8N1F7 819 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 MMGT1Q8N4V1 131 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 FAM71BQ8TC56 605 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 FAM172AQ8WUF8 416 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 TEKT4Q8WW24 435 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 DPF3Q92784 378 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 GOLGA1Q92805 767 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 FAM149B1Q96BN6 582 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 RBM41Q96IZ5 413 aaKnown RBP12.01□□□□□ -0.49
C9orf3-220ENST00000489318 PGLYRP2Q96PD5 576 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 PEBP4Q96S96 227 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 NAP1L3Q99457 506 aaPredicted RBP12.01□□□□□ -0.49
C9orf3-220ENST00000489318 TTLL2Q9BWV7 592 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 FBXO44Q9H4M3 255 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 MRPL17Q9NRX2 175 aaKnown RBP12.01□□□□□ -0.49
C9orf3-220ENST00000489318 SMARCAL1Q9NZC9 954 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 USP18Q9UMW8 372 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 SCML2Q9UQR0 700 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 NR2E3Q9Y5X4 410 aa12.01□□□□□ -0.49
C9orf3-220ENST00000489318 MTCL1Q9Y4B5 1905 aaKnown RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 C3orf70A6NLC5 250 aaPredicted RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 CCDC188H7C350 402 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 RTN3O95197 1032 aaPredicted RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 TRUB2O95900 331 aaKnown RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 IGLV3-25P01717 112 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 FGGP02679 453 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 RPL17P18621 184 aaKnown RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 TFE3P19532 575 aaPredicted RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 MAGEA10P43363 369 aaPredicted RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 TUFMP49411 452 aaKnown RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 GPR15P49685 360 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 SULT1E1P49888 294 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 ARSEP51690 589 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 CDR1P51861 262 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 ARPP19P56211 112 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 RNASE9P60153 205 aaKnown RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 UBE3AQ05086 875 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 KLF1Q13351 362 aaPredicted RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 EIF4EBP2Q13542 120 aaPredicted RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 C9orf50Q5SZB4 431 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 SH3PXD2AQ5TCZ1 1133 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 SYPL2Q5VXT5 272 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 DENND5BQ6ZUT9 1274 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 SLC13A5Q86YT5 568 aaPredicted RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 SCN4BQ8IWT1 228 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 KLHL23Q8NBE8 558 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 CMASQ8NFW8 434 aaPredicted RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 SCAMP5Q8TAC9 235 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 NDRG1Q92597 394 aaKnown RBP12□□□□□ -0.49
C9orf3-220ENST00000489318 SLITRK1Q96PX8 696 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 CALCOCO1Q9P1Z2 691 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 EFR3BQ9Y2G0 817 aa12□□□□□ -0.49
C9orf3-220ENST00000489318 UQCRHLA0A096LP55 91 aa11.99□□□□□ -0.49
C9orf3-220ENST00000489318 ZNF487B1APH4 448 aa11.99□□□□□ -0.49
C9orf3-220ENST00000489318 C2CD2LO14523 706 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms