RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	BEST2	Q8NFU1	509 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	E2F7	Q96AV8	911 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	ANKRD36BP1	Q96IX9	119 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	CEP63	Q96MT8	703 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	LRRC3	Q9BY71	257 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	GPR88	Q9GZN0	384 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	DNAJC25	Q9H1X3	360 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	C8orf33	Q9H7E9	229 aa	Predicted RBP	9.34	□□□□□ -0.91
USP4-213	ENST00000488520	TRPV4	Q9HBA0	871 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	CNTN3	Q9P232	1028 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	TUBGCP4	Q9UGJ1	667 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	CPSF3	Q9UKF6	684 aa	Known RBP	9.34	□□□□□ -0.91
USP4-213	ENST00000488520	WDFY3	Q8IZQ1	3526 aa		9.34	□□□□□ -0.91
USP4-213	ENST00000488520	MYBPHL	A2RUH7	354 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	LACTBL1	A8MY62	500 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	GOLGA6L19	H0YKK7	550 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	MAPK13	O15264	365 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	PHACTR2	O75167	634 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	TMEM191B	P0C7N4	346 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	BMP6	P22004	513 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	MSX1	P28360	303 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	GABRR2	P28476	465 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	ALDH1A3	P47895	512 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	AP3M2	P53677	418 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	EPHB3	P54753	998 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	FCHO2	Q0JRZ9	810 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	CETN1	Q12798	172 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	DUOXA2	Q1HG44	320 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	SLC10A6	Q3KNW5	377 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	DPCR1	Q3MIW9	517 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	ANO6	Q4KMQ2	910 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	TCERG1L	Q5VWI1	586 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	SPATA1	Q5VX52	437 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	FOXR2	Q6PJQ5	311 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	INTS8	Q75QN2	995 aa	Known RBP	9.33	□□□□□ -0.92
USP4-213	ENST00000488520	KBTBD6	Q86V97	674 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	WDR5B	Q86VZ2	330 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	RALGPS2	Q86X27	583 aa	Predicted RBP	9.33	□□□□□ -0.92
USP4-213	ENST00000488520	NT5DC4	Q86YG4	428 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	TTC9B	Q8N6N2	239 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	9.33	□□□□□ -0.92
USP4-213	ENST00000488520	DDX1	Q92499	740 aa	Known RBP	9.33	□□□□□ -0.92
USP4-213	ENST00000488520	CCDC127	Q96BQ5	260 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	CALR3	Q96L12	384 aa	Known RBP	9.33	□□□□□ -0.92
USP4-213	ENST00000488520	TMEM209	Q96SK2	561 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	IKZF4	Q9H2S9	585 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	ATXN3L	Q9H3M9	355 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	TSPY26P	Q9H489	355 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	ZNF358	Q9NW07	568 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	POLR3B	Q9NW08	1133 aa	Predicted RBP	9.33	□□□□□ -0.92
USP4-213	ENST00000488520	DMAC2	Q9NW81	257 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	ARMCX3	Q9UH62	379 aa	Predicted RBP	9.33	□□□□□ -0.92
USP4-213	ENST00000488520	DERA	Q9Y315	318 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	PLXND1	Q9Y4D7	1925 aa		9.33	□□□□□ -0.92
USP4-213	ENST00000488520	TRIM49B	A6NDI0	452 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	PES1	O00541	588 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	CDK2AP1	O14519	115 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	ABLIM1	O14639	778 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	TM4SF5	O14894	197 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	SLC16A3	O15427	465 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	RPP40	O75818	363 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	PAPSS2	O95340	614 aa	Predicted RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	ZNF806	P0C7X5	589 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	CXCL8	P10145	99 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	DLAT	P10515	647 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	PML	P29590	882 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	TNFSF9	P41273	254 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	MTIF2	P46199	727 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	ZNF165	P49910	485 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	VAMP7	P51809	220 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	GUCY2F	P51841	1108 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	MLLT6	P55198	1093 aa	Predicted RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	CYP4F8	P98187	520 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	TFAM	Q00059	246 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	SRSF11	Q05519	484 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	PLD1	Q13393	1074 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	TRPC3	Q13507	836 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	CCIN	Q13939	588 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	LBR	Q14739	615 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	TMEM132D	Q14C87	1099 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	ENOX2	Q16206	610 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	ARHGAP29	Q52LW3	1261 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	STPG1	Q5TH74	334 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	C1orf228	Q6PIY5	440 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	LRSAM1	Q6UWE0	723 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	DSTYK	Q6XUX3	929 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	GAREM2	Q75VX8	874 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	CBWD2	Q8IUF1	395 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	PGBD3	Q8N328	593 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	ATAD1	Q8NBU5	361 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	CCDC150	Q8NCX0	1101 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	ENOX1	Q8TC92	643 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	TMEM174	Q8WUU8	243 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	MSANTD3	Q96H12	275 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	MKNK1	Q9BUB5	465 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	HAPLN2	Q9GZV7	340 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	SMG9	Q9H0W8	520 aa	Known RBP	9.32	□□□□□ -0.92
USP4-213	ENST00000488520	MAFF	Q9ULX9	164 aa		9.32	□□□□□ -0.92
USP4-213	ENST00000488520	UBQLN1	Q9UMX0	589 aa	Known RBP	9.32	□□□□□ -0.92

Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms