RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 GAREM2Q75VX8 874 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 TMEM110Q86TL2 294 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 TMC8Q8IU68 726 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 NPAS3Q8IXF0 933 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 UBALD2Q8IYN6 164 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 SCML4Q8N228 414 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 ZNF276Q8N554 614 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 CELF5Q8N6W0 485 aaKnown RBP8.69□□□□□ -1.02
SF3A1-208ENST00000485618 C1orf131Q8NDD1 294 aaKnown RBP8.69□□□□□ -1.02
SF3A1-208ENST00000485618 OR8K1Q8NGG5 319 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 SHKBP1Q8TBC3 707 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 ZSCAN18Q8TBC5 510 aaPredicted RBP8.69□□□□□ -1.02
SF3A1-208ENST00000485618 DEPDC1BQ8WUY9 529 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 CPLX3Q8WVH0 158 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 EXOC4Q96A65 974 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 ELSPBP1Q96BH3 223 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 MRFAP1L1Q96HT8 127 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 PPP1R13BQ96KQ4 1090 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 AGPAT1Q99943 283 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 LRRC3Q9BY71 257 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 KIF9Q9HAQ2 790 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 TRPV4Q9HBA0 871 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 TRPC7Q9HCX4 862 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 TDP1Q9NUW8 608 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 WDR35Q9P2L0 1181 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 LIMD1Q9UGP4 676 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 CHORDC1Q9UHD1 332 aaPredicted RBP8.69□□□□□ -1.02
SF3A1-208ENST00000485618 NAGPAQ9UK23 515 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 USP3Q9Y6I4 520 aa8.69□□□□□ -1.02
SF3A1-208ENST00000485618 ANKRD62A6NC57 917 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 C2CD4DB7Z1M9 353 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 AKR1B15C9JRZ8 316 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-208ENST00000485618 SLC9A3R1O14745 358 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-208ENST00000485618 CAPN9O14815 690 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 ECI2O75521 394 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 BEST1O76090 585 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 SERPING1P05155 500 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 LCP1P13796 627 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 CEBPBP17676 345 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 ATP5C1P36542 298 aaKnown RBP8.68□□□□□ -1.02
SF3A1-208ENST00000485618 PBX1P40424 430 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 YWHAGP61981 247 aaKnown RBP eCLIP8.68□□□□□ -1.02
SF3A1-208ENST00000485618 COG7P83436 770 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 ADIGQ0VDE8 80 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 MTA1Q13330 715 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 TDGQ13569 410 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 CCDC142Q17RM4 750 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 PKDCCQ504Y2 493 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 TAF3Q5VWG9 929 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 DENND1BQ6P3S1 775 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 BEND5Q7L4P6 421 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 TTC30AQ86WT1 665 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 ARID3BQ8IVW6 561 aaPredicted RBP8.68□□□□□ -1.02
SF3A1-208ENST00000485618 VSTM4Q8IW00 320 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 CMTM8Q8IZV2 173 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 MAB21L3Q8N8X9 362 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 ZMIZ2Q8NF64 920 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 EPS8L1Q8TE68 723 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 ING5Q8WYH8 240 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 C18orf8Q96DM3 657 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 TRIM11Q96F44 468 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 MYADMQ96S97 322 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 DEF6Q9H4E7 631 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 IL21Q9HBE4 155 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 ABCC13Q9NSE7 274 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 RRN3Q9NYV6 651 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 DNMT3LQ9UJW3 386 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 LSM7Q9UK45 103 aaKnown RBP8.68□□□□□ -1.02
SF3A1-208ENST00000485618 SORCS3Q9UPU3 1222 aa8.68□□□□□ -1.02
SF3A1-208ENST00000485618 USP34Q70CQ2 3546 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 GOLGA6L3A6NEY3 463 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 LRRC53A6NM62 1247 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 HHLA1C9JL84 531 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 ANHXE9PGG2 379 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 EPHB6O15197 1021 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 GALR2O43603 387 aaPredicted RBP8.67□□□□□ -1.02
SF3A1-208ENST00000485618 NRDCO43847 1150 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 TLR5O60602 858 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 HSF2BPO75031 334 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 CALB1P05937 261 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 ASGR2P07307 311 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 ZDHHC11BP0C7U3 371 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 RARGP13631 454 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 CDH5P33151 784 aaPredicted RBP8.67□□□□□ -1.02
SF3A1-208ENST00000485618 PRKCIP41743 596 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 RPL34P49207 117 aaKnown RBP8.67□□□□□ -1.02
SF3A1-208ENST00000485618 RGS7P49802 495 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 NUBP1P53384 320 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 CACNA2D1P54289 1103 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 USP46P62068 366 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 YWHAZP63104 245 aaKnown RBP8.67□□□□□ -1.02
SF3A1-208ENST00000485618 SLC7A9P82251 487 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 NR1H3Q13133 447 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 PDCLQ13371 301 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 SLC5A9Q2M3M2 681 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 TDRD12Q587J7 1177 aaKnown RBP8.67□□□□□ -1.02
SF3A1-208ENST00000485618 FAM78AQ5JUQ0 283 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 C10orf120Q5SQS8 335 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 NAA35Q5VZE5 725 aa8.67□□□□□ -1.02
SF3A1-208ENST00000485618 TXNDC8Q6A555 127 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms