RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 GRSF1Q12849 480 aaKnown RBP eCLIP13.6□□□□□ -0.23
HDAC1-209ENST00000484305 NR1H3Q13133 447 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 GOLGA7BQ2TAP0 167 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 SGO2Q562F6 1265 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 ZC3H14Q6PJT7 736 aaKnown RBP13.6□□□□□ -0.23
HDAC1-209ENST00000484305 RRAGAQ7L523 313 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 TTC30AQ86WT1 665 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 DDX42Q86XP3 938 aaKnown RBP eCLIP13.6□□□□□ -0.23
HDAC1-209ENST00000484305 ARHGEF19Q8IW93 802 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 PPM1KQ8N3J5 372 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 MLKLQ8NB16 471 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 ANKRD52Q8NB46 1076 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 NELL1Q92832 810 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 WBP2Q969T9 261 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 P2RY13Q9BPV8 354 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 NMUR1Q9HB89 426 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 CYLDQ9NQC7 956 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 USP3Q9Y6I4 520 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 KIAA1549LQ6ZVL6 1849 aa13.6□□□□□ -0.23
HDAC1-209ENST00000484305 E2F8A0AVK6 867 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 TULP2O00295 520 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 SLC9A3R1O14745 358 aaPredicted RBP13.59□□□□□ -0.23
HDAC1-209ENST00000484305 FGFR1OPO95684 399 aaKnown RBP13.59□□□□□ -0.23
HDAC1-209ENST00000484305 AFPP02771 609 aaKnown RBP13.59□□□□□ -0.23
HDAC1-209ENST00000484305 CYP17A1P05093 508 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 CD19P15391 556 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 ATP5C1P36542 298 aaKnown RBP13.59□□□□□ -0.23
HDAC1-209ENST00000484305 CCR3P51677 355 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 GAB4Q2WGN9 574 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 RAB41Q5JT25 222 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 PKN3Q6P5Z2 889 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 RHBDF2Q6PJF5 856 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 TMEM270Q6UE05 265 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 CCDC186Q7Z3E2 898 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 SCD5Q86SK9 330 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 PIGZQ86VD9 579 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 IRF2BP1Q8IU81 584 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 CREBRFQ8IUR6 639 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 SYNPOQ8N3V7 929 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 KIAA1958Q8N8K9 716 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 ZBTB44Q8NCP5 570 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 TFAP2BQ92481 460 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 EZH1Q92800 747 aaPredicted RBP13.59□□□□□ -0.23
HDAC1-209ENST00000484305 CD101Q93033 1021 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 CNOT6LQ96LI5 555 aaKnown RBP13.59□□□□□ -0.23
HDAC1-209ENST00000484305 KLF16Q9BXK1 252 aaPredicted RBP13.59□□□□□ -0.23
HDAC1-209ENST00000484305 UBXN6Q9BZV1 441 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 NACA2Q9H009 215 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 NUP62CLQ9H1M0 184 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.59□□□□□ -0.23
HDAC1-209ENST00000484305 ZSCAN32Q9NX65 697 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 NUDT5Q9UKK9 219 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 TSPAN16Q9UKR8 245 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 PCDHB4Q9Y5E5 795 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 FAM186AA6NE01 2351 aa13.59□□□□□ -0.23
HDAC1-209ENST00000484305 O00370 1275 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 MDM4O15151 490 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 CALCAP01258 141 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 IRF1P10914 325 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 VDRP11473 427 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 RARGP13631 454 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 DRD1P21728 446 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 HOXC13P31276 330 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 OPRD1P41143 372 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 PDE4CQ08493 712 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 PPP2R5DQ14738 602 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 DHCR24Q15392 516 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 DPCR1Q3MIW9 517 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 UBA3Q8TBC4 463 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 ATRIPQ8WXE1 791 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 ZSWIM1Q9BR11 485 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 INTS2Q9H0H0 1204 aaKnown RBP13.58□□□□□ -0.24
HDAC1-209ENST00000484305 SEMA4AQ9H3S1 761 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 TBC1D14Q9P2M4 693 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 NAGPAQ9UK23 515 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 SH3BP1Q9Y3L3 701 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 PCDHGA2Q9Y5H1 932 aa13.58□□□□□ -0.24
HDAC1-209ENST00000484305 PTPRZ1P23471 2315 aaPredicted RBP13.58□□□□□ -0.24
HDAC1-209ENST00000484305 K7ESF4 209 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 XPO1O14980 1071 aaKnown RBP13.57□□□□□ -0.24
HDAC1-209ENST00000484305 GREM1O60565 184 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 LILRB5O75023 590 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 RNF40O75150 1001 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 LMNAP02545 664 aaKnown RBP13.57□□□□□ -0.24
HDAC1-209ENST00000484305 PAEPP09466 180 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 TKTL1P51854 596 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 BCAT1P54687 386 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 SLC8A3P57103 927 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 GCNT1Q02742 428 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 DMWDQ09019 674 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 BST2Q10589 180 aaKnown RBP13.57□□□□□ -0.24
HDAC1-209ENST00000484305 PKDCCQ504Y2 493 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 C10orf120Q5SQS8 335 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 KLHDC10Q6PID8 442 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 BBS7Q8IWZ6 715 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 SUMF1Q8NBK3 374 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 NDRG1Q92597 394 aaKnown RBP13.57□□□□□ -0.24
HDAC1-209ENST00000484305 KREMEN1Q96MU8 473 aa13.57□□□□□ -0.24
HDAC1-209ENST00000484305 FAM126AQ9BYI3 521 aaPredicted RBP13.57□□□□□ -0.24
HDAC1-209ENST00000484305 POLR3BQ9NW08 1133 aaPredicted RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms