RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ENTPD3O75355 529 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 STAM2O75886 525 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 CCNFP41002 786 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 CHN2P52757 468 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 EIF3EP60228 445 aaKnown RBP13.81□□□□□ -0.2
USP40-214ENST00000483519 PDE1BQ01064 536 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 LRRC36Q1X8D7 754 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 PPM1NQ8N819 430 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 SLC26A7Q8TE54 656 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 ZNF518BQ9C0D4 1074 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 PTTG2Q9NZH5 202 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 COL20A1Q9P218 1284 aa13.81□□□□□ -0.2
USP40-214ENST00000483519 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 A6NJR5 290 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 MEI4A8MW99 385 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 SNNO75324 88 aaPredicted RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 TMCC1O94876 653 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 ASLP04424 464 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 PSMA2P25787 234 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 AQP4P55087 323 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 KRT76Q01546 638 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 CXCL9Q07325 125 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 UBAP2LQ14157 1087 aaKnown RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 PDK3Q15120 406 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP40-214ENST00000483519 ANKRD20A4Q4UJ75 823 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 ARMC3Q5W041 872 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 ANO5Q75V66 913 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 WDR75Q8IWA0 830 aaKnown RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 GPC2Q8N158 579 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 GDPD5Q8WTR4 605 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 BTBD9Q96Q07 612 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 IMPG2Q9BZV3 1241 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 STN1Q9H668 368 aaKnown RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP40-214ENST00000483519 SLC9A2Q9UBY0 812 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 HERC5Q9UII4 1024 aaKnown RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 CCPG1Q9ULG6 757 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 SDR42E2A6NKP2 422 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 YDJCA8MPS7 323 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 APOC4-APOC2K7ER74 178 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 BIRC5O15392 142 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 AP1G1O43747 822 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 KLHL2O95198 593 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 APOC2P02655 101 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 RPS12P25398 132 aaKnown RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 GRIA2P42262 883 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 ZNF132P52740 706 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 MRPS5P82675 430 aaKnown RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 SLC25A11Q02978 314 aaKnown RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 SMTNL2Q2TAL5 461 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 ARCQ7LC44 396 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 SATL1Q86VE3 508 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 LENG1Q96BZ8 264 aaPredicted RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 DGCR14Q96DF8 476 aaKnown RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 CFAP36Q96G28 342 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 CEP170P1Q96L14 293 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 FRMD8Q9BZ67 464 aaPredicted RBP13.8□□□□□ -0.2
USP40-214ENST00000483519 SMYD3Q9H7B4 428 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 FEM1BQ9UK73 627 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 PTPRJQ12913 1337 aa13.8□□□□□ -0.2
USP40-214ENST00000483519 GLTPD2A6NH11 291 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 LGR5O75473 907 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 RAD17O75943 681 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 KRT38O76015 456 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 KDELR1P24390 212 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 COPAP53621 1224 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 MRPS9P82933 396 aaKnown RBP13.79□□□□□ -0.2
USP40-214ENST00000483519 STX3Q13277 289 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 MSLNQ13421 630 aaPredicted RBP13.79□□□□□ -0.2
USP40-214ENST00000483519 TAZQ16635 292 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 LPCAT4Q643R3 524 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 MCF2L2Q86YR7 1114 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 RFX6Q8HWS3 928 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 ICA1LQ8NDH6 482 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 MCPH1Q8NEM0 835 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 LZICQ8WZA0 190 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 MPP4Q96JB8 637 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 SLC13A1Q9BZW2 595 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 THAP1Q9NVV9 213 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 GALNT8Q9NY28 637 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 RBAKQ9NYW8 714 aaPredicted RBP13.79□□□□□ -0.2
USP40-214ENST00000483519 AGO2Q9UKV8 859 aaKnown RBP13.79□□□□□ -0.2
USP40-214ENST00000483519 TTLL3Q9Y4R7 772 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 NUB1Q9Y5A7 615 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 COL4A5P29400 1685 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 TXNDC9O14530 226 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 CHADO15335 359 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 ZNF862O60290 1169 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 C6orf222P0C671 652 aaPredicted RBP13.79□□□□□ -0.2
USP40-214ENST00000483519 RBP3P10745 1247 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 PEX2P28328 305 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 NLRP11P59045 1033 aaKnown RBP13.79□□□□□ -0.2
USP40-214ENST00000483519 SLC25A3Q00325 362 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 TMEM259Q4ZIN3 620 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 CIDEBQ9UHD4 219 aa13.79□□□□□ -0.2
USP40-214ENST00000483519 TRDMT1O14717 391 aaKnown RBP13.78□□□□□ -0.2
USP40-214ENST00000483519 PEX1O43933 1283 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 ICAM1P05362 532 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 BPGMP07738 259 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms