RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 PCDH19Q8TAB3 1148 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 TEKT4Q8WW24 435 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 MAGEB5Q9BZ81 275 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 CLUHO75153 1309 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 BRCA2P51587 3418 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 DCAF8L1A6NGE4 600 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 POC1B-GALNT4F8VUJ3 575 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 ATP2C2O75185 946 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 KIAA0754O94854 1291 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 RPL34P49207 117 aaKnown RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 SNX16P57768 344 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 SV2CQ496J9 727 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 PPP6R3Q5H9R7 873 aaPredicted RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 YTHDF3Q7Z739 585 aaKnown RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 CACNA2D3Q8IZS8 1091 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 TBCBQ99426 244 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 C11orf84Q9BUA3 381 aaPredicted RBP13.57□□□□□ -0.24
SEC13-216ENST00000479868 UBN1Q9NPG3 1134 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 CACNG4Q9UBN1 327 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 HEY1Q9Y5J3 304 aa13.57□□□□□ -0.24
SEC13-216ENST00000479868 RASA4BC9J798 803 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 H7C0C1 242 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 MDM4O15151 490 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 RASA4O43374 803 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 HUS1O60921 280 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 GNAT1P11488 350 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 AKR1A1P14550 325 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 STIP1P31948 543 aaKnown RBP13.56□□□□□ -0.24
SEC13-216ENST00000479868 MAGEA9P43362 315 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 ATP5OP48047 213 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 LIG3P49916 1009 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 ARL4CP56559 192 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 SF3A3Q12874 501 aaKnown RBP eCLIP13.56□□□□□ -0.248e-7■■□□□ 14.1
SEC13-216ENST00000479868 SYCP2LQ5T4T6 812 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 TADA2BQ86TJ2 420 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 RIBC1Q8N443 379 aaPredicted RBP13.56□□□□□ -0.24
SEC13-216ENST00000479868 LRRN4Q8WUT4 740 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 DYDC1Q8WWB3 177 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 SOCS4Q8WXH5 440 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 CABS1Q96KC9 395 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 USP29Q9HBJ7 922 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 XPO7Q9UIA9 1087 aaKnown RBP13.56□□□□□ -0.24
SEC13-216ENST00000479868 APOL1O14791 398 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 SSTR1P30872 391 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 PTPN9P43378 593 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 SLC9A4Q6AI14 798 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 SAPCD2Q86UD0 394 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 OTUD6BQ8N6M0 293 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 B3GALNT2Q8NCR0 500 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 PYROXD1Q8WU10 500 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 CENPIQ92674 756 aaPredicted RBP13.56□□□□□ -0.24
SEC13-216ENST00000479868 WNT8BQ93098 351 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 MRRFQ96E11 262 aaKnown RBP13.56□□□□□ -0.24
SEC13-216ENST00000479868 PPP1R10Q96QC0 940 aaKnown RBP13.56□□□□□ -0.24
SEC13-216ENST00000479868 TSPAN18Q96SJ8 248 aa13.56□□□□□ -0.24
SEC13-216ENST00000479868 SCN10AQ9Y5Y9 1956 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 E7ESA3 106 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 PIAS1O75925 651 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 VIMP08670 466 aaKnown RBP13.55□□□□□ -0.24
SEC13-216ENST00000479868 ACAT1P24752 427 aaKnown RBP13.55□□□□□ -0.24
SEC13-216ENST00000479868 BCAR1P56945 870 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 CRHR2Q13324 411 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 GNASQ5JWF2 1037 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 RNF187Q5TA31 235 aaPredicted RBP13.55□□□□□ -0.24
SEC13-216ENST00000479868 RGMBQ6NW40 437 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 TAF2Q6P1X5 1199 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 TRABD2AQ86V40 505 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 TAX1BP1Q86VP1 789 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 TDRPQ86YL5 185 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 FBXO36Q8NEA4 188 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 GDAP1Q8TB36 358 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 NDRG1Q92597 394 aaKnown RBP13.55□□□□□ -0.24
SEC13-216ENST00000479868 ZNF670Q9BS34 389 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 PHACTR1Q9C0D0 580 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 RASSF4Q9H2L5 321 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 ZMYND8Q9ULU4 1186 aaPredicted RBP13.55□□□□□ -0.24
SEC13-216ENST00000479868 ACTL7BQ9Y614 415 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 CDY2AQ9Y6F7 541 aa13.55□□□□□ -0.24
SEC13-216ENST00000479868 CLDN5O00501 218 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 DUSP11O75319 330 aaKnown RBP13.54□□□□□ -0.24
SEC13-216ENST00000479868 BEST1O76090 585 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 DESP17661 470 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 TGM2P21980 687 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 LRPAP1P30533 357 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 L1CAMP32004 1257 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 AFF1P51825 1210 aaKnown RBP13.54□□□□□ -0.24
SEC13-216ENST00000479868 MRPS6P82932 125 aaKnown RBP13.54□□□□□ -0.24
SEC13-216ENST00000479868 EFTUD2Q15029 972 aaKnown RBP eCLIP13.54□□□□□ -0.242e-11■■■□□ 17.2
SEC13-216ENST00000479868 PKN2Q16513 984 aaKnown RBP13.54□□□□□ -0.24
SEC13-216ENST00000479868 BBS9Q3SYG4 887 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 CXCL17Q6UXB2 119 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 PIGWQ7Z7B1 504 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 FUKQ8N0W3 1084 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 FAF2Q96CS3 445 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 TNIP3Q96KP6 325 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 KIF9Q9HAQ2 790 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 RABGEF1Q9UJ41 708 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 CYB561D2O14569 222 aa13.54□□□□□ -0.24
SEC13-216ENST00000479868 KCNN4O15554 427 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms