RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 NFICP08651 508 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 KRT19P08727 400 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 GTF2H1P32780 548 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 BMPR1AP36894 532 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 PNPLA4P41247 253 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 MTIF2P46199 727 aaKnown RBP6.62□□□□□ -1.35
SF3B1-209ENST00000479532 CASP4P49662 377 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 PMS1P54277 932 aaKnown RBP6.62□□□□□ -1.35
SF3B1-209ENST00000479532 BCAR1P56945 870 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 ID3Q02535 119 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 SPAG1Q07617 926 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 ELAVL2Q12926 359 aaKnown RBP6.62□□□□□ -1.35
SF3B1-209ENST00000479532 MYO1EQ12965 1108 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 BIRC3Q13489 604 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 TRPC3Q13507 836 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 FAM109BQ6ICB4 259 aaPredicted RBP6.62□□□□□ -1.35
SF3B1-209ENST00000479532 DCLRE1AQ6PJP8 1040 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 KCNT2Q6UVM3 1135 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 EGFL6Q8IUX8 553 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 ZC3H3Q8IXZ2 948 aaKnown RBP6.62□□□□□ -1.35
SF3B1-209ENST00000479532 COLGALT2Q8IYK4 626 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 TXLNBQ8N3L3 684 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 PPP1R10Q96QC0 940 aaKnown RBP6.62□□□□□ -1.35
SF3B1-209ENST00000479532 IMPG2Q9BZV3 1241 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 TSPY26PQ9H489 355 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 CWH43Q9H720 699 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 PDE11AQ9HCR9 933 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 DPP3Q9NY33 737 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 ACTR10Q9NZ32 417 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 SPG21Q9NZD8 308 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 SIRPGQ9P1W8 387 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 ITGA11Q9UKX5 1188 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 SSX2IPQ9Y2D8 614 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 HIF3AQ9Y2N7 669 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 YBX2Q9Y2T7 364 aaKnown RBP6.62□□□□□ -1.35
SF3B1-209ENST00000479532 NUB1Q9Y5A7 615 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 PAXBP1Q9Y5B6 917 aa6.62□□□□□ -1.35
SF3B1-209ENST00000479532 SF3B1O75533 1304 aaKnown RBP eCLIP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 LCHNA4D1U4 455 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 LRRIQ3A6PVS8 624 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 PES1O00541 588 aaKnown RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 NRP1O14786 923 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 IKBKBO14920 756 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 TMPRSS2O15393 492 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 ATP8B1O43520 1251 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 B3GAT3O94766 335 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 DDHD2O94830 711 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 GALTP07902 379 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 P4HA1P13674 534 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 MYOGP15173 224 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 EEF1GP26641 437 aaKnown RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 LRPAP1P30533 357 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 CA8P35219 290 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 PIK3CAP42336 1068 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 SLC11A1P49279 550 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 TAF6P49848 677 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 ERVK-21P61565 698 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 ETF1P62495 437 aaKnown RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 RBP5P82980 135 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 TAP1Q03518 808 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 UBE3AQ05086 875 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 DSC1Q08554 894 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 PPP2R5EQ16537 467 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 PTPROQ16827 1216 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 SV2CQ496J9 727 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 EPC2Q52LR7 807 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 PPM1JQ5JR12 505 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 OVOS1Q6IE37 1185 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 PDXDC1Q6P996 788 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 LILRA6Q6PI73 481 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 DSTYKQ6XUX3 929 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 LRRC55Q6ZSA7 311 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 C11orf57Q6ZUT1 292 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 ZNF280BQ86YH2 543 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 SUGP1Q8IWZ8 645 aaKnown RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 EFCAB13Q8IY85 973 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 AOPEPQ8N6M6 819 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 GSTCDQ8NEC7 633 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 ZSWIM2Q8NEG5 633 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 PARD3BQ8TEW8 1205 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 ARNTL2Q8WYA1 636 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 C18orf25Q96B23 403 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 EEF2KMTQ96G04 330 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 CNOT6LQ96LI5 555 aaKnown RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 ZMAT2Q96NC0 199 aaKnown RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 TMPRSS13Q9BYE2 586 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 MTMR12Q9C0I1 747 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 DNAI2Q9GZS0 605 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 LMAN2LQ9H0V9 348 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 MMRN2Q9H8L6 949 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 INTS13Q9NVM9 706 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 MIOSQ9NXC5 875 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 DNAJB4Q9UDY4 337 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 TUBGCP4Q9UGJ1 667 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 ADAM28Q9UKQ2 775 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 MTUS1Q9ULD2 1270 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 AP4E1Q9UPM8 1137 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 PRG3Q9Y2Y8 225 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-209ENST00000479532 NFE2L3Q9Y4A8 694 aa6.61□□□□□ -1.35
SF3B1-209ENST00000479532 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms