RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 GDF9O60383 454 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 GREM1O60565 184 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 ATG13O75143 517 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 RPP40O75818 363 aaKnown RBP17.62■□□□□ 0.41
USP40-212ENST00000473191 RETP07949 1114 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 FAM200BP0CF97 657 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 CD44P16070 742 aaKnown RBP17.62■□□□□ 0.41
USP40-212ENST00000473191 ACO1P21399 889 aaKnown RBP17.62■□□□□ 0.41
USP40-212ENST00000473191 CNR2P34972 360 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 ATXN1P54253 815 aaKnown RBP17.62■□□□□ 0.41
USP40-212ENST00000473191 KDSRQ06136 332 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 DGLUCYQ7Z3D6 616 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 PHTF2Q8N3S3 785 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 SPATA20Q8TB22 786 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 GAB3Q8WWW8 586 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 P2RY11Q96G91 374 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 IMPG2Q9BZV3 1241 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 CYP3A43Q9HB55 503 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 SEMA4GQ9NTN9 838 aa17.62■□□□□ 0.41
USP40-212ENST00000473191 A0A1W2PQH9 124 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 TLR5O60602 858 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 MXI1P50539 228 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 ENPEPQ07075 957 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 PUM1Q14671 1186 aaKnown RBP eCLIP17.61■□□□□ 0.41
USP40-212ENST00000473191 DCAF17Q5H9S7 520 aaPredicted RBP17.61■□□□□ 0.41
USP40-212ENST00000473191 TMEM92Q6UXU6 159 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 ERMP1Q7Z2K6 904 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 TMEM25Q86YD3 366 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 ZC3H3Q8IXZ2 948 aaKnown RBP17.61■□□□□ 0.41
USP40-212ENST00000473191 SLC4A11Q8NBS3 891 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 SMOC1Q9H4F8 434 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 RXFP3Q9NSD7 469 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 COMMD8Q9NX08 183 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 RAB20Q9NX57 234 aa17.61■□□□□ 0.41
USP40-212ENST00000473191 E2F8A0AVK6 867 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 CETN3O15182 167 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 GADD45BO75293 160 aaPredicted RBP17.6■□□□□ 0.41
USP40-212ENST00000473191 EPB41P11171 864 aaKnown RBP17.6■□□□□ 0.41
USP40-212ENST00000473191 ADH5P11766 374 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 BMP6P22004 513 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 GTF2H1P32780 548 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 TIE1P35590 1138 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 TUBP50607 506 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 RAD23BP54727 409 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 BECN1Q14457 450 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 SCD5Q86SK9 330 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 CAMKK1Q8N5S9 505 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 ALLCQ8N6M5 410 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 FBXL13Q8NEE6 735 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 GSDMAQ96QA5 445 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 KLF16Q9BXK1 252 aaPredicted RBP17.6■□□□□ 0.41
USP40-212ENST00000473191 TPSD1Q9BZJ3 242 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 ARRDC1-AS1Q9H2J1 176 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 CISHQ9NSE2 258 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 HCN2Q9UL51 889 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 SCML2Q9UQR0 700 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 SH3BP1Q9Y3L3 701 aa17.6■□□□□ 0.41
USP40-212ENST00000473191 CCDC163A0A0D9SF12 145 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 DCDC2BA2VCK2 349 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 SLC9A3R1O14745 358 aaPredicted RBP17.59■□□□□ 0.41
USP40-212ENST00000473191 KAT7O95251 611 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 CCDC192P0DO97 292 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 KIF11P52732 1056 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 NUCB2P80303 420 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 SF3A2Q15428 464 aaKnown RBP17.59■□□□□ 0.41
USP40-212ENST00000473191 COBLL1Q53SF7 1204 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 TCERG1LQ5VWI1 586 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 PRR23CQ6ZRP0 262 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 DDX42Q86XP3 938 aaKnown RBP eCLIP17.59■□□□□ 0.41
USP40-212ENST00000473191 ETFBKMTQ8IXQ9 262 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 GPR161Q8N6U8 529 aaKnown RBP17.59■□□□□ 0.41
USP40-212ENST00000473191 KIAA1958Q8N8K9 716 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 SMARCE1Q969G3 411 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 HEXIM2Q96MH2 286 aaKnown RBP17.59■□□□□ 0.41
USP40-212ENST00000473191 PNKPQ96T60 521 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 DUSP16Q9BY84 665 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 NACA2Q9H009 215 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 FBXO44Q9H4M3 255 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 CYLDQ9NQC7 956 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 TLR8Q9NR97 1041 aaKnown RBP17.59■□□□□ 0.41
USP40-212ENST00000473191 RMND1Q9NWS8 449 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 MAN1B1Q9UKM7 699 aa17.59■□□□□ 0.41
USP40-212ENST00000473191 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.58■□□□□ 0.4
USP40-212ENST00000473191 GOLGA6L4A6NEF3 574 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 SGK1O00141 431 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 TULP2O00295 520 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 APBB3O95704 486 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 RARGP13631 454 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 KIR2DL1P43626 348 aaPredicted RBP17.58■□□□□ 0.4
USP40-212ENST00000473191 LMNB2Q03252 620 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 TTC30AQ86WT1 665 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 FRMD1Q8N878 549 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 IL17RCQ8NAC3 791 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 TXNDC5Q8NBS9 432 aaKnown RBP17.58■□□□□ 0.4
USP40-212ENST00000473191 MDGA1Q8NFP4 955 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 NDRG1Q92597 394 aaKnown RBP17.58■□□□□ 0.4
USP40-212ENST00000473191 TMEM176AQ96HP8 235 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 DUSP15Q9H1R2 295 aaPredicted RBP17.58■□□□□ 0.4
USP40-212ENST00000473191 ARHGEF4Q9NR80 690 aa17.58■□□□□ 0.4
USP40-212ENST00000473191 SPHK2Q9NRA0 654 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms