RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 AMPD2Q01433 879 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 CC2D1AQ6P1N0 951 aaPredicted RBP18.74■□□□□ 0.59
COL7A1-205ENST00000465238 LRSAM1Q6UWE0 723 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 ENOSF1Q7L5Y1 443 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 LONP2Q86WA8 852 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 STKLD1Q8NE28 680 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 KAT5Q92993 513 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 TSPY26PQ9H489 355 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 HPS4Q9NQG7 708 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 FAM49BQ9NUQ9 324 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 APEX2Q9UBZ4 518 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 NCOR2Q9Y618 2525 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 CLDN5O00501 218 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 TADA3O75528 432 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 TGM1P22735 817 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 ANXA13P27216 316 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 RAD23BP54727 409 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 SIM2Q14190 667 aaPredicted RBP18.73■□□□□ 0.59
COL7A1-205ENST00000465238 PDGFRLQ15198 375 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 TMEM196Q5HYL7 178 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 TMEM270Q6UE05 265 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 PRR23BQ6ZRT6 265 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 LUZP1Q86V48 1076 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 UBR7Q8N806 425 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 C12orf29Q8N999 325 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 SLC4A11Q8NBS3 891 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 SLC2A14Q8TDB8 520 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 JAKMIP2Q96AA8 810 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 CYFIP2Q96F07 1278 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 ZNF518BQ9C0D4 1074 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 EBF3Q9H4W6 596 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 USP18Q9UMW8 372 aa18.73■□□□□ 0.59
COL7A1-205ENST00000465238 GREB1Q4ZG55 1949 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 ANAPC1Q9H1A4 1944 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 TRDMT1O14717 391 aaKnown RBP18.72■□□□□ 0.59
COL7A1-205ENST00000465238 TRIM66O15016 1216 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 LRP3O75074 770 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 RETP07949 1114 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 CCDC130P13994 396 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 DMWDQ09019 674 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 KCNMA1Q12791 1236 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 GRSF1Q12849 480 aaKnown RBP eCLIP18.72■□□□□ 0.59
COL7A1-205ENST00000465238 LPAL2Q16609 132 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 FILIP1LQ4L180 1135 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 TRIM68Q6AZZ1 485 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 GJB7Q6PEY0 223 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 FAM35AQ86V20 835 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 FUKQ8N0W3 1084 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 CEP295NLQ96MC4 621 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 KREMEN1Q96MU8 473 aa18.72■□□□□ 0.59
COL7A1-205ENST00000465238 HNRNPABQ99729 332 aaKnown RBP18.72■□□□□ 0.59
COL7A1-205ENST00000465238 TRAV19A0A0A6YYK7 116 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 OTOL1A6NHN0 477 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-205ENST00000465238 LGALS16A8MUM7 142 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 HRO43593 1189 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 CKMP06732 381 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 USP17L7P0C7H9 530 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 CD19P15391 556 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 ACO1P21399 889 aaKnown RBP18.71■□□□□ 0.59
COL7A1-205ENST00000465238 ADORA2BP29275 332 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 APBA1Q02410 837 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 UBXN1Q04323 297 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 MTF1Q14872 753 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 ARHGAP44Q17R89 818 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 HEATR6Q6AI08 1181 aaKnown RBP18.71■□□□□ 0.59
COL7A1-205ENST00000465238 PAQR9Q6ZVX9 377 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 RIN3Q8TB24 985 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 EXOC4Q96A65 974 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 SMARCD1Q96GM5 515 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 SPATA17Q96L03 361 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 C8orf48Q96LL4 319 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 PCMTD1Q96MG8 357 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-205ENST00000465238 LSM14BQ9BX40 385 aaKnown RBP18.71■□□□□ 0.59
COL7A1-205ENST00000465238 TRPC7Q9HCX4 862 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 PARD6AQ9NPB6 346 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 SIX2Q9NPC8 291 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 C2orf42Q9NWW7 574 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 DNAJC12Q9UKB3 198 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 KIAA1257Q9ULG3 409 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 RALGAPA1Q6GYQ0 2036 aa18.71■□□□□ 0.59
COL7A1-205ENST00000465238 SPTBN2O15020 2390 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 MED19A0JLT2 244 aaPredicted RBP18.7■□□□□ 0.58
COL7A1-205ENST00000465238 F8VP50 259 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 ATG13O75143 517 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 AP1G2O75843 785 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 SERPINC1P01008 464 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 PAEPP09466 180 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 KRT5P13647 590 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 ARSAP15289 507 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 SGO2Q562F6 1265 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 FSTL4Q6MZW2 842 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 WDR5BQ86VZ2 330 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 CPA6Q8N4T0 437 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 RBBP8NLQ8NC74 664 aaPredicted RBP18.7■□□□□ 0.58
COL7A1-205ENST00000465238 CHFRQ96EP1 664 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 KRT82Q9NSB4 513 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 CDV3Q9UKY7 258 aaKnown RBP18.7■□□□□ 0.58
COL7A1-205ENST00000465238 ATG2BQ96BY7 2078 aa18.7■□□□□ 0.58
COL7A1-205ENST00000465238 FAM200BP0CF97 657 aa18.69■□□□□ 0.58
COL7A1-205ENST00000465238 VDRP11473 427 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms