RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SMC1AQ14683 1233 aaKnown RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 RTP5Q14D33 572 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 PCBP1Q15365 356 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP54-208ENST00000461520 SLC10A6Q3KNW5 377 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 EARS2Q5JPH6 523 aaKnown RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 MROH9Q5TGP6 573 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 CATSPER4Q7RTX7 472 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 SRGAP1Q7Z6B7 1085 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 FERMT3Q86UX7 667 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 LINC00482Q8N8I6 264 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 VN1R2Q8NFZ6 395 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 TCP11Q8WWU5 503 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 PSPC1Q8WXF1 523 aaKnown RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 DDX1Q92499 740 aaKnown RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 SUSD6Q92537 303 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 GTF3C6Q969F1 213 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 PGBD4Q96DM1 585 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 CHAMP1Q96JM3 812 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 LXNQ9BS40 222 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 ZSWIM4Q9H7M6 989 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 IFT122Q9HBG6 1241 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 GJB4Q9NTQ9 266 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 AGPAT5Q9NUQ2 364 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 WRAP73Q9P2S5 460 aaPredicted RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 PIN4Q9Y237 131 aaKnown RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 USP15Q9Y4E8 981 aaPredicted RBP8.06□□□□□ -1.12
USP54-208ENST00000461520 COL4A3BPQ9Y5P4 624 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 X6R8D5 127 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 KMT2EQ8IZD2 1858 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 ZDBF2Q9HCK1 2354 aa8.06□□□□□ -1.12
USP54-208ENST00000461520 WDR81Q562E7 1941 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 HIDE1A8MVS5 230 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 ASAP2O43150 1006 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 SLITRK3O94933 977 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 CAPNS1P04632 268 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 CELA3BP08861 270 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 STAT5AP42229 794 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 TECP42680 631 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 SLC6A11P48066 632 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 RBM25P49756 843 aaKnown RBP8.05□□□□□ -1.12
USP54-208ENST00000461520 RBM10P98175 930 aaKnown RBP8.05□□□□□ -1.12
USP54-208ENST00000461520 SPIRE1Q08AE8 756 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 GIT2Q14161 759 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 ME3Q16798 604 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 NOMO2Q5JPE7 1267 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 ACBD5Q5T8D3 534 aaPredicted RBP8.05□□□□□ -1.12
USP54-208ENST00000461520 NCAPH2Q6IBW4 605 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 ANKRD54Q6NXT1 300 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 GLB1LQ6UWU2 654 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 MIB1Q86YT6 1006 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 Q8N1Y9 231 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 MRPL43Q8N983 215 aaKnown RBP8.05□□□□□ -1.12
USP54-208ENST00000461520 PRSS33Q8NF86 280 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 PRPF31Q8WWY3 499 aaKnown RBP8.05□□□□□ -1.12
USP54-208ENST00000461520 EDAQ92838 391 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 CASP10Q92851 521 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 C1orf159Q96HA4 380 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 DYDC2Q96IM9 177 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 SNX27Q96L92 541 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 KRTAP9-3Q9BYQ3 159 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 S1PR5Q9H228 398 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 TBC1D13Q9NVG8 400 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 RGL1Q9NZL6 768 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 NTMQ9P121 344 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 STK39Q9UEW8 545 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 PCDHA12Q9UN75 941 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 R3HCC1Q9Y3T6 440 aaKnown RBP8.05□□□□□ -1.12
USP54-208ENST00000461520 USP34Q70CQ2 3546 aa8.05□□□□□ -1.12
USP54-208ENST00000461520 NT5C1B-RDH14C9J2C7 533 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 NOBOXO60393 691 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 DTNBO60941 627 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 ZC3H11AO75152 810 aaKnown RBP eCLIP8.04□□□□□ -1.12
USP54-208ENST00000461520 OFD1O75665 1012 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 LYPLA2O95372 231 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 CXCL14O95715 111 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 GALTP07902 379 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 SRGAP2CP0DJJ0 459 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 AXLP30530 894 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 NEK4P51957 841 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 PPP2R2AP63151 447 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 RNASELQ05823 741 aaKnown RBP8.04□□□□□ -1.12
USP54-208ENST00000461520 ITIH3Q06033 890 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 POU5F1BQ06416 359 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 LAMTOR4Q0VGL1 99 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 TRIM29Q14134 588 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 CTTNQ14247 550 aaKnown RBP8.04□□□□□ -1.12
USP54-208ENST00000461520 MXD4Q14582 209 aaPredicted RBP8.04□□□□□ -1.12
USP54-208ENST00000461520 EMC2Q15006 297 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 CALCRLQ16602 461 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 XKR9Q5GH70 373 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 LCE5AQ5TCM9 118 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 SYCE2Q6PIF2 218 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 ANKS3Q6ZW76 656 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 BMP8AQ7Z5Y6 402 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 MRPL10Q7Z7H8 261 aaKnown RBP8.04□□□□□ -1.12
USP54-208ENST00000461520 DDX53Q86TM3 631 aaKnown RBP8.04□□□□□ -1.12
USP54-208ENST00000461520 NECAB1Q8N987 351 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 RNF149Q8NC42 400 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 CNNM3Q8NE01 707 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 NSUN7Q8NE18 718 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms