RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 BDNFP23560 247 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 PON1P27169 355 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 USP8P40818 1118 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 ZNF445P59923 1031 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 LRRC32Q14392 662 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 SOWAHCQ53LP3 525 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-207ENST00000461113 TMEM270Q6UE05 265 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 PDZD4Q76G19 769 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-207ENST00000461113 NEK11Q8NG66 645 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 LMO3Q8TAP4 145 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 CYFIP2Q96F07 1278 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 SMARCD1Q96GM5 515 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 PCED1BQ96HM7 432 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 CEP295NLQ96MC4 621 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 DPEP3Q9H4B8 488 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 ASAH2Q9NR71 780 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 HESX1Q9UBX0 185 aa13.26□□□□□ -0.29
HDAC4-207ENST00000461113 DOCK6Q96HP0 2047 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 NBEAQ8NFP9 2946 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 HCRTO43612 131 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 RPP40O75818 363 aaKnown RBP13.25□□□□□ -0.29
HDAC4-207ENST00000461113 PAEPP09466 180 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 FAM200BP0CF97 657 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 PSMC3P17980 439 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 CYP2F1P24903 491 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 HOXA6P31267 233 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 MPLP40238 635 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 PXNP49023 591 aaPredicted RBP13.25□□□□□ -0.29
HDAC4-207ENST00000461113 STILQ15468 1287 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 ARHGAP44Q17R89 818 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 SGO2Q562F6 1265 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 VITQ6UXI7 678 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 ARHGEF19Q8IW93 802 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 GAB3Q8WWW8 586 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 TCEAL4Q96EI5 215 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 PKMYT1Q99640 499 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 ARID3AQ99856 593 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 CORO1BQ9BR76 489 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 EDEM2Q9BV94 578 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 AVENQ9NQS1 362 aaPredicted RBP13.25□□□□□ -0.29
HDAC4-207ENST00000461113 VPS45Q9NRW7 570 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 TMLHEQ9NVH6 421 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 UXTQ9UBK9 157 aaPredicted RBP13.25□□□□□ -0.29
HDAC4-207ENST00000461113 DNAJC12Q9UKB3 198 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 PCDHGA5Q9Y5G8 931 aa13.25□□□□□ -0.29
HDAC4-207ENST00000461113 F5P12259 2224 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 WDFY3Q8IZQ1 3526 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 ZNF263O14978 683 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 CBFA2T2O43439 604 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 MED7O43513 233 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 AP1G2O75843 785 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 VDRP11473 427 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 ATP1A3P13637 1013 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 ADORA2BP29275 332 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 VIPR2P41587 438 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 SOX9P48436 509 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 CDR1P51861 262 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 RAD23BP54727 409 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 BPIFB4P59827 614 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 ORC1Q13415 861 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 RAPGEF1Q13905 1077 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 SYCP1Q15431 976 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 KIAA1211LQ6NV74 962 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 DNAJB7Q7Z6W7 309 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-207ENST00000461113 FMNL3Q8IVF7 1028 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 RBBP8NLQ8NC74 664 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-207ENST00000461113 SLC2A14Q8TDB8 520 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 GIPC2Q8TF65 315 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 PSMG2Q969U7 264 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 ASB16Q96NS5 453 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 HNRNPABQ99729 332 aaKnown RBP13.24□□□□□ -0.29
HDAC4-207ENST00000461113 B3GNT5Q9BYG0 378 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 DMAP1Q9NPF5 467 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-207ENST00000461113 PLCB1Q9NQ66 1216 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 FAM49BQ9NUQ9 324 aa13.24□□□□□ -0.29
HDAC4-207ENST00000461113 MTCL1Q9Y4B5 1905 aaKnown RBP13.23□□□□□ -0.29
HDAC4-207ENST00000461113 AKAP13Q12802 2813 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 MYL4P12829 197 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 CCDC130P13994 396 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 CDC25CP30307 473 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 UBASH3AP57075 661 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 FANCCQ00597 558 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 PTK2Q05397 1052 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 DDR2Q16832 855 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 ARHGAP15Q53QZ3 475 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 PRSS36Q5K4E3 855 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 DGKKQ5KSL6 1271 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 KLHDC7AQ5VTJ3 777 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 DAB2IPQ5VWQ8 1189 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 C19orf48Q6RUI8 117 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 FAM35AQ86V20 835 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 TTC9BQ8N6N2 239 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 C12orf29Q8N999 325 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 SLC4A11Q8NBS3 891 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 RNF214Q8ND24 703 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 WHAMMQ8TF30 809 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 SMARCD2Q92925 531 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 SPATA17Q96L03 361 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 C8orf48Q96LL4 319 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 ZSWIM3Q96MP5 696 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms