RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 PNMA3Q9UL41 463 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 NEU2Q9Y3R4 380 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 VWA5AO00534 786 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ZC3H11AO75152 810 aaKnown RBP eCLIP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 E2F6O75461 281 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 DGAT1O75907 488 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 EGFRP00533 1210 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 OAS1P00973 400 aaKnown RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 SFTPCP11686 197 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 HARSP12081 509 aaKnown RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ETS1P14921 441 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ACO1P21399 889 aaKnown RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 CCND2P30279 289 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 SLC12A2P55011 1212 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 CSE1LP55060 971 aaKnown RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 BPIFB4P59827 614 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 RPL7AP62424 266 aaKnown RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 PRKCEQ02156 737 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 CAV1Q03135 178 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 TMED2Q15363 201 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 AP1ARQ63HQ0 302 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 SPATA21Q7Z572 469 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ZNF677Q86XU0 584 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ACSF2Q96CM8 615 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 RBM15Q96T37 977 aaKnown RBP eCLIP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 HAPLN2Q9GZV7 340 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 C17orf75Q9HAS0 396 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.3□□□□□ -0.44
SYNE2-207ENST00000458046 ZNF541Q9H0D2 1346 aa12.3□□□□□ -0.44
SYNE2-207ENST00000458046 SPAG7O75391 227 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 COL9A1P20849 921 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 MAGEA4P43358 317 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 NOMO3P69849 1222 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 MAP3K10Q02779 954 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 CUL2Q13617 745 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 WLSQ5T9L3 541 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 GPR153Q6NV75 609 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 ABRAQ8N0Z2 381 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 FITM2Q8N6M3 262 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 TTLL6Q8N841 843 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 MCPH1Q8NEM0 835 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 PDLIM7Q9NR12 457 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 ANKFY1Q9P2R3 1169 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 TRIM33Q9UPN9 1127 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 PDPK1O15530 556 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 NDUFB5O43674 189 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 CDH16O75309 829 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 MTRF1O75570 445 aaKnown RBP12.29□□□□□ -0.44
SYNE2-207ENST00000458046 PSAPP07602 524 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 NCALDP61601 193 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 SEMA3AQ14563 771 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 PSMD6Q15008 389 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 PDE12Q6L8Q7 609 aaKnown RBP12.29□□□□□ -0.44
SYNE2-207ENST00000458046 CRELD2Q6UXH1 353 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-207ENST00000458046 GIMAP7Q8NHV1 300 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 HAUS1Q96CS2 278 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 RMDN2Q96LZ7 410 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 TBATAQ96M53 351 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 CCDC77Q9BR77 488 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 SAYSD1Q9NPB0 183 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 NKIRAS1Q9NYS0 192 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 RBAKQ9NYW8 714 aaPredicted RBP12.29□□□□□ -0.44
SYNE2-207ENST00000458046 ARHGAP28Q9P2N2 729 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 DNPEPQ9ULA0 475 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 ZNF148Q9UQR1 794 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 L3MBTL1Q9Y468 752 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 AK5Q9Y6K8 562 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 LOXHD1Q8IVV2 1947 aa12.29□□□□□ -0.44
SYNE2-207ENST00000458046 LRRIQ4A6NIV6 560 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 POC1B-GALNT4F8VUJ3 575 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 PAHP00439 452 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 PAPOLAP51003 745 aaKnown RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 ACTR2P61160 394 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 CXCL9Q07325 125 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 STRN3Q13033 797 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 TMEM63BQ5T3F8 832 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 CGB2Q6NT52 195 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 MIS18BP1Q6P0N0 1132 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 KATNAL2Q8IYT4 538 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 RBBP8NLQ8NC74 664 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 OR5B17Q8NGF7 314 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 RADILQ96JH8 1075 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 NUDT16L1Q9BRJ7 211 aaKnown RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 TARS2Q9BW92 718 aaKnown RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 MRPL47Q9HD33 250 aaKnown RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 JPH1Q9HDC5 661 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 MYOZ2Q9NPC6 264 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 ARL2BPQ9Y2Y0 163 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 COL4A5P29400 1685 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 IGF2BP3O00425 579 aaKnown RBP eCLIP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 PSTPIP1O43586 416 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 RPSAP08865 295 aaKnown RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 EZRP15311 586 aaKnown RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 NQO1P15559 274 aaKnown RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 KLRC2P26717 231 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 FOXN2P32314 431 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 POLGP54098 1239 aaPredicted RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 NEDD9Q14511 834 aa12.28□□□□□ -0.44
SYNE2-207ENST00000458046 FASTKD3Q14CZ7 662 aaKnown RBP12.28□□□□□ -0.44
SYNE2-207ENST00000458046 RASA2Q15283 850 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms