RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 EML5Q05BV3 1969 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 PATE3B3GLJ2 98 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 ZNF217O75362 1048 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 TULP3O75386 442 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 HSP90AA1P07900 732 aaKnown RBP14.07□□□□□ -0.16
HMGB3-204ENST00000448905 NTSR1P30989 418 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 ATP5C1P36542 298 aaKnown RBP14.07□□□□□ -0.16
HMGB3-204ENST00000448905 AFMP43652 599 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 SLC5A3P53794 718 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 KDSRQ06136 332 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 GFPT1Q06210 699 aaPredicted RBP14.07□□□□□ -0.16
HMGB3-204ENST00000448905 FOXC1Q12948 553 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 C10orf76Q5T2E6 689 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 ATL3Q6DD88 541 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 HTR3DQ70Z44 454 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 ACOT1Q86TX2 421 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 FAM35AQ86V20 835 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 UNC93AQ86WB7 457 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 CRYBG2Q8N1P7 616 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 HDDC3Q8N4P3 179 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 PARD3BQ8TEW8 1205 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 CCSER2Q9H7U1 834 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 SLC6A14Q9UN76 642 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 STARD13Q9Y3M8 1113 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 NME7Q9Y5B8 376 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 GREB1Q4ZG55 1949 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 SCN1AP35498 2009 aa14.07□□□□□ -0.16
HMGB3-204ENST00000448905 ZNF638Q14966 1978 aaKnown RBP14.06□□□□□ -0.16
HMGB3-204ENST00000448905 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.06□□□□□ -0.16
HMGB3-204ENST00000448905 GIPC1O14908 333 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 IKBKBO14920 756 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 TLR5O60602 858 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 KIF20AO95235 890 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 C4BPAP04003 597 aaKnown RBP14.06□□□□□ -0.16
HMGB3-204ENST00000448905 CFIP05156 583 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 CLDN10P78369 228 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 EHHADHQ08426 723 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 DUOXA1Q1HG43 343 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 MAP7D1Q3KQU3 841 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 GRAMD4Q6IC98 578 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 SLC23A3Q6PIS1 610 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 ARMCX6Q7L4S7 300 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 TADA2BQ86TJ2 420 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 C12orf40Q86WS4 652 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 TMEM25Q86YD3 366 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 BBS7Q8IWZ6 715 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 SMYD3Q9H7B4 428 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 TMEM30AQ9NV96 361 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 GMIPQ9P107 970 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 FRMD4BQ9Y2L6 1034 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 EPG5Q9HCE0 2579 aa14.06□□□□□ -0.16
HMGB3-204ENST00000448905 MAP1BP46821 2468 aaKnown RBP14.05□□□□□ -0.16
HMGB3-204ENST00000448905 FAM92AA1XBS5 289 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 TMEM8BA6NDV4 472 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 ADAM23O75077 832 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 SLFN14P0C7P3 912 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 ZDHHC11BP0C7U3 371 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 IRF1P10914 325 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 HOXB2P14652 356 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 HNRNPLP14866 589 aaKnown RBP eCLIP14.05□□□□□ -0.16
HMGB3-204ENST00000448905 ENGP17813 658 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 PTGER3P43115 390 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 MAPK8P45983 427 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 PLA2G4AP47712 749 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 CASP4P49662 377 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 MAP3K7CLP57077 242 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 RPL6Q02878 288 aaKnown RBP14.05□□□□□ -0.16
HMGB3-204ENST00000448905 CUL4BQ13620 913 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 E2F5Q15329 346 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 UNQ6494/PRO21346Q6UXR6 183 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 PAQR9Q6ZVX9 377 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 SLC9A9Q8IVB4 645 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 ETFBKMTQ8IXQ9 262 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 CHPFQ8IZ52 775 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 FUKQ8N0W3 1084 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 TERB1Q8NA31 727 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 SLC2A14Q8TDB8 520 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 TMEM174Q8WUU8 243 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 BBS2Q9BXC9 721 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 IMPG2Q9BZV3 1241 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 CSNK1G1Q9HCP0 422 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 KRT82Q9NSB4 513 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 EXOC1Q9NV70 894 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 DNAJC17Q9NVM6 304 aaKnown RBP14.05□□□□□ -0.16
HMGB3-204ENST00000448905 PILRBQ9UKJ0 227 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 TSC2P49815 1807 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 ACACBO00763 2458 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 TCHHQ07283 1943 aa14.05□□□□□ -0.16
HMGB3-204ENST00000448905 DENND4CQ5VZ89 1909 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 ANTXRLA6NF34 631 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 LRRIQ3A6PVS8 624 aaPredicted RBP14.04□□□□□ -0.16
HMGB3-204ENST00000448905 PDXKO00764 312 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 SYPP08247 313 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 SERPINF2P08697 491 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 FAM200BP0CF97 657 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 MESP2Q0VG99 397 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 HNRNPDQ14103 355 aaKnown RBP14.04□□□□□ -0.16
HMGB3-204ENST00000448905 SYCP2LQ5T4T6 812 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 SCARA5Q6ZMJ2 495 aa14.04□□□□□ -0.16
HMGB3-204ENST00000448905 SFTPA1Q8IWL2 248 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms