RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TFRCP02786 760 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 HEXBP07686 556 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 GJB1P08034 283 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 BTF3P20290 206 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 RFC1P35251 1148 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SLC11A2P49281 568 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CDH8P55286 799 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 INSM1Q01101 510 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ACTN3Q08043 901 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TRIM71Q2Q1W2 868 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 HSP90AB3PQ58FF7 597 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 LIPMQ5VYY2 423 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ADALQ6DHV7 355 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SLC2A7Q6PXP3 512 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 RGS9BPQ6ZS82 235 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CCDC105Q8IYK2 499 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 DPP10Q8N608 796 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 POC5Q8NA72 575 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 MCUQ8NE86 351 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 NEK11Q8NG66 645 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SMARCC2Q8TAQ2 1214 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 FBXO30Q8TB52 745 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CCDC110Q8TBZ0 833 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 IFI44Q8TCB0 444 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF480Q8WV37 535 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 FAM162AQ96A26 154 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SYAP1Q96A49 352 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 DYDC2Q96IM9 177 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 MOGAT1Q96PD6 335 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TSGA13Q96PP4 275 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CTAGE1Q96RT6 745 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SLC25A32Q9H2D1 315 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 KCNF1Q9H3M0 494 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 MUC13Q9H3R2 512 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SMURF2Q9HAU4 748 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ZBTB26Q9HCK0 441 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TRMT1Q9NXH9 659 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ARMCX3Q9UH62 379 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TELO2Q9Y4R8 837 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 EPN1Q9Y6I3 576 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ZNF785A8K8V0 405 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PRR33A8MZF0 331 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 MCF2LO15068 1137 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ADAM20O43506 726 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SNRPA1P09661 255 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ERCC2P18074 760 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CPT2P23786 658 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 NRIP1P48552 1158 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PTDSS1P48651 473 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 EGR3Q06889 387 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TBL3Q12788 808 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 RALGDSQ12967 914 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 NFATC3Q12968 1075 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 MAN2A1Q16706 1144 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 DGKDQ16760 1214 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PLEKHS1Q5SXH7 462 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ERMARDQ5T6L9 678 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ETFRF1Q6IPR1 90 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CEP128Q6ZU80 1094 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CHST9Q7L1S5 443 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ANKS1BQ7Z6G8 1248 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SCML4Q8N228 414 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 LINS1Q8NG48 757 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ZCCHC10Q8TBK6 192 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 DENND1AQ8TEH3 1009 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 KCNE4Q8WWG9 221 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ARHGEF2Q92974 986 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CDCA5Q96FF9 252 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CEP95Q96GE4 821 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PPP1R13BQ96KQ4 1090 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 FCRL2Q96LA5 508 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 FUZQ9BT04 418 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 DUSP23Q9BVJ7 150 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SLC39A2Q9NP94 309 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 RRP7BPQ9NSQ0 103 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 GIMAP4Q9NUV9 329 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 CACNG4Q9UBN1 327 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 UBA2Q9UBT2 640 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 AURKCQ9UQB9 309 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PLEKHM1Q9Y4G2 1056 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 A0A1W2PRV1 198 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 URADA6NGE7 173 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SAC3D1A6NKF1 404 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 AQP7P3A6NL99 342 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SHISA8B8ZZ34 492 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 GRM6O15303 877 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 DYNC1LI2O43237 492 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PRPSAP2O60256 369 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TULP3O75386 442 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 LEFTY1O75610 366 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 KIF20AO95235 890 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 PNPP00491 289 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ANXA6P08133 673 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 LTA4HP09960 611 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 GPD2P43304 727 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 ARF5P84085 180 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 KCNMA1Q12791 1236 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 SF3A3Q12874 501 aaKnown RBP eCLIP2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 RPA4Q13156 261 aa2.48□□□□□ -2.01
CCDC88A-208ENST00000444458 TBCCQ15814 346 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms