RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 OCEL1Q9H607 264 aa9.4□□□□□ -0.9
COPB1-202ENST00000439561 ACSS2Q9NR19 701 aa9.4□□□□□ -0.9
COPB1-202ENST00000439561 TJP2Q9UDY2 1190 aa9.4□□□□□ -0.9
COPB1-202ENST00000439561 STRIP2Q9ULQ0 834 aa9.4□□□□□ -0.9
COPB1-202ENST00000439561 DLEC1Q9Y238 1755 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 M0QYV0 167 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 ZC3H11AO75152 810 aaKnown RBP eCLIP9.4□□□□□ -0.912e-10■■■■□ 19.9
COPB1-202ENST00000439561 CSDE1O75534 798 aaKnown RBP9.4□□□□□ -0.91
COPB1-202ENST00000439561 CYP1A1P04798 512 aaPredicted RBP9.4□□□□□ -0.91
COPB1-202ENST00000439561 VCLP18206 1134 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 NELFEP18615 380 aaKnown RBP9.4□□□□□ -0.91
COPB1-202ENST00000439561 NUDT2P50583 147 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 ACTR3P61158 418 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 SFT2D3Q587I9 215 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 PODNQ7Z5L7 613 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 TTLL6Q8N841 843 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 DRAXINQ8NBI3 349 aaPredicted RBP9.4□□□□□ -0.91
COPB1-202ENST00000439561 UBA3Q8TBC4 463 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 NAT14Q8WUY8 206 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 GATA6Q92908 595 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 PPWD1Q96BP3 646 aaKnown RBP9.4□□□□□ -0.91
COPB1-202ENST00000439561 MFSD14AQ96MC6 490 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 HEXIM2Q96MH2 286 aaKnown RBP9.4□□□□□ -0.91
COPB1-202ENST00000439561 S100A14Q9HCY8 104 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 EURLQ9NYK6 297 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 COQ4Q9Y3A0 265 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 SNCAIPQ9Y6H5 919 aa9.4□□□□□ -0.91
COPB1-202ENST00000439561 CCDC78A2IDD5 438 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 MMP8P22894 467 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 KDELR1P24390 212 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 TYK2P29597 1187 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 ALDH1B1P30837 517 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 RGS7P49802 495 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 NCKAP1LP55160 1127 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 MRPS22P82650 360 aaKnown RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 SPP2Q13103 211 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 EML3Q32P44 896 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 SLC39A4Q6P5W5 647 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 PHF13Q86YI8 300 aaPredicted RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 C4orf19Q8IY42 314 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 SHKBP1Q8TBC3 707 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 SLC44A1Q8WWI5 657 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 SREK1Q8WXA9 508 aaKnown RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 CDKL2Q92772 493 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 USP13Q92995 863 aaPredicted RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 TLE6Q9H808 572 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 ZNRF3Q9ULT6 936 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 INPP5FQ9Y2H2 1132 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 COMMD3-BMI1R4GMX3 469 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 MYOCOSA0A1B0GUC4 107 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 CXorf49A8MYA2 514 aaPredicted RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 MAGEC1O60732 1142 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 DGAT1O75907 488 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 TNNC2P02585 160 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 PSAPP07602 524 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 CDH8P55286 799 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 SNRPFP62306 86 aaKnown RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 PTP4A2Q12974 167 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 BAATQ14032 418 aaPredicted RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 OASLQ15646 514 aaKnown RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 RARS2Q5T160 578 aaKnown RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 N4BP2L1Q5TBK1 243 aaPredicted RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 PDPK2PQ6A1A2 396 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 KRT80Q6KB66 452 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 EEPD1Q7L9B9 569 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 RELL1Q8IUW5 271 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 STKLD1Q8NE28 680 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 NKD2Q969F2 451 aaPredicted RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 VCPIP1Q96JH7 1222 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 CLMNQ96JQ2 1002 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 MRPL1Q9BYD6 325 aaKnown RBP9.39□□□□□ -0.91
COPB1-202ENST00000439561 TMEM39BQ9GZU3 492 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 KCNK13Q9HB14 408 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 TMEM165Q9HC07 324 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 ATXN10Q9UBB4 475 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 FEM1BQ9UK73 627 aa9.39□□□□□ -0.91
COPB1-202ENST00000439561 C15orf38-AP3S2A0A0A6YYH1 394 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 KLHL2O95198 593 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 CCNE2O96020 404 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 PDGFRAP16234 1089 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 GARTP22102 1010 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 MIPP30301 263 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 SFNP31947 248 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 ABCG1P45844 678 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 SLC18A1P54219 525 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 WNT7BP56706 349 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 FOLH1Q04609 750 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 ART3Q13508 389 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 TFDP2Q14188 446 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 DENND1BQ6P3S1 775 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 ARPINQ7Z6K5 226 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 LCA5Q86VQ0 697 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 NETO2Q8NC67 525 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 CMTM5Q96DZ9 223 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 SCYL1Q96KG9 808 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 TSNARE1Q96NA8 513 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 ANKEF1Q9NU02 776 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 PNPOQ9NVS9 261 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 IL1RAPL1Q9NZN1 696 aa9.38□□□□□ -0.91
COPB1-202ENST00000439561 USP18Q9UMW8 372 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms