RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 UTP6Q9NYH9 597 aaKnown RBP17.74■□□□□ 0.43
PTPRF-209ENST00000438120 E9PCH4 1651 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 PTPRMP28827 1452 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 NYAP1Q6ZVC0 841 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 PGLYRP2Q96PD5 576 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 ZC4H2Q9NQZ6 224 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 KDM1AO60341 852 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 ALDH1A2O94788 518 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 MT-CO1P00395 513 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 ATP6V1B1P15313 513 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 SERPINB8P50452 374 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 SCNN1BP51168 640 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 PTPN11Q06124 597 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-209ENST00000438120 TP53BP2Q13625 1128 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 CSHL1Q14406 222 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 CCDC142Q17RM4 750 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 ZNF333Q96JL9 665 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 MYL4P12829 197 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 ITGB6P18564 788 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 MOXD1Q6UVY6 613 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 TFAP2DQ7Z6R9 452 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 CCDC60Q8IWA6 550 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-209ENST00000438120 RIN3Q8TB24 985 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 PAFAH2Q99487 392 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 CCT7Q99832 543 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 RNF19AQ9NV58 838 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 SETBP1Q9Y6X0 1596 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 LRRIQ3A6PVS8 624 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-209ENST00000438120 TPH1P17752 444 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 S100A5P33763 92 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 GCLCP48506 637 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-209ENST00000438120 KLC1Q07866 573 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 PKN1Q16512 942 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 CACHD1Q5VU97 1274 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 PIF1Q9H611 641 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 PTPRHQ9HD43 1115 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 TSPAN3O60637 253 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 NT5DC3Q86UY8 548 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 SPATC1LQ9H0A9 340 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 CDC42EP4Q9H3Q1 356 aaKnown RBP17.73■□□□□ 0.43
PTPRF-209ENST00000438120 CAAP1Q9H8G2 361 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 DCDC2Q9UHG0 476 aa17.73■□□□□ 0.43
PTPRF-209ENST00000438120 EFL1Q7Z2Z2 1120 aaKnown RBP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 RERGLQ9H628 205 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 F9P00740 461 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 CHI3L1P36222 383 aaPredicted RBP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 MRPS15P82914 257 aaKnown RBP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 TIGD7Q6NT04 549 aaPredicted RBP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 TMCO5AQ8N6Q1 288 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 ANKRD7Q92527 254 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 MAGEB10Q96LZ2 347 aaPredicted RBP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 VPS9D1Q9Y2B5 631 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 PDHXO00330 501 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 CPSF4O95639 269 aaKnown RBP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 RANBP1P43487 201 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 EARS2Q5JPH6 523 aaKnown RBP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 MAP1SQ66K74 1059 aaPredicted RBP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 BBS7Q8IWZ6 715 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 OSGEPL1Q9H4B0 414 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 BLOC1S6Q9UL45 172 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 PCNAP12004 261 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 FGFR2P21802 821 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 CYP2F1P24903 491 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 GPC1P35052 558 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 FBXO47Q5MNV8 452 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 METTL7BQ6UX53 244 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 C4orf19Q8IY42 314 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 LRRC40Q9H9A6 602 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 SLC40A1Q9NP59 571 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 ARHGAP20Q9P2F6 1191 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 KIAA1257Q9ULG3 409 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 HNRNPCP07910 306 aaKnown RBP eCLIP17.72■□□□□ 0.43
PTPRF-209ENST00000438120 MYO1HQ8N1T3 1032 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 COLGALT1Q8NBJ5 622 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 FBXO25Q8TCJ0 367 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 CLPBQ9H078 707 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 HPSEQ9Y251 543 aa17.72■□□□□ 0.43
PTPRF-209ENST00000438120 CLK1P49759 484 aaKnown RBP17.71■□□□□ 0.43
PTPRF-209ENST00000438120 CAMK2GQ13555 558 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-209ENST00000438120 GRIK4Q16099 956 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 NFIL3Q16649 462 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 ADAM32Q8TC27 787 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 FRMD8Q9BZ67 464 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-209ENST00000438120 IL17RBQ9NRM6 502 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 DNAJC16Q9Y2G8 782 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 NPM3O75607 178 aaKnown RBP17.71■□□□□ 0.43
PTPRF-209ENST00000438120 CHMP1BQ7LBR1 199 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 NLRP9Q7RTR0 991 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 SLC16A10Q8TF71 515 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 CNPY3Q9BT09 278 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 SCN3BQ9NY72 215 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 DLC1Q96QB1 1528 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 DIP2AQ14689 1571 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 ERI2A8K979 691 aaKnown RBP17.71■□□□□ 0.43
PTPRF-209ENST00000438120 E9PBE3 544 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 KLHL41O60662 606 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 PROSCO94903 275 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 EGFRP00533 1210 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 CCND1P24385 295 aa17.71■□□□□ 0.43
PTPRF-209ENST00000438120 POU6F1Q14863 301 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms