RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 PLA2G4AP47712 749 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 SLC7A9P82251 487 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 ZXDBP98169 803 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 PTK2Q05397 1052 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 TNK2Q07912 1038 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 ZNF77Q15935 545 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 RAB41Q5JT25 222 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 PMF1Q6P1K2 205 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 APTXQ7Z2E3 356 aaKnown RBP19.63■□□□□ 0.73
SHH-203ENST00000435425 CCDC186Q7Z3E2 898 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 SCD5Q86SK9 330 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 SIX6OS1Q8N1H7 587 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 GANQ9H2C0 597 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 PLCB1Q9NQ66 1216 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 GTSE1Q9NYZ3 720 aa19.63■□□□□ 0.73
SHH-203ENST00000435425 TRIOO75962 3097 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 LRRC10BA6NIK2 292 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 SCAMP3O14828 347 aaKnown RBP19.62■□□□□ 0.73
SHH-203ENST00000435425 TLR5O60602 858 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 OLFM2O95897 454 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 ZBED1O96006 694 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 IRF1P10914 325 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 CLCN1P35523 988 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 KPNA1P52294 538 aaPredicted RBP19.62■□□□□ 0.73
SHH-203ENST00000435425 POLR2FP61218 127 aaKnown RBP19.62■□□□□ 0.73
SHH-203ENST00000435425 TPM4P67936 248 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 USP4Q13107 963 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 SLC47A2Q86VL8 602 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 SLC35F5Q8WV83 523 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 KCTD13Q8WZ19 329 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 SHDQ96IW2 340 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 EBF3Q9H4W6 596 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 NLRC4Q9NPP4 1024 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 ST7Q9NRC1 585 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 CFAP97Q9P2B7 532 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 SIK3Q9Y2K2 1263 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 WNT6Q9Y6F9 365 aa19.62■□□□□ 0.73
SHH-203ENST00000435425 ARNTLO00327 626 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 MDM4O15151 490 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 RALAP11233 206 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 ARSAP15289 507 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 ATP5C1P36542 298 aaKnown RBP19.61■□□□□ 0.73
SHH-203ENST00000435425 SOX9P48436 509 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 IFNAR2P48551 515 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 TUBP50607 506 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 VCPP55072 806 aaKnown RBP19.61■□□□□ 0.73
SHH-203ENST00000435425 YWHAGP61981 247 aaKnown RBP eCLIP19.61■□□□□ 0.73
SHH-203ENST00000435425 PLCB2Q00722 1185 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 PRKCQQ04759 706 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 C10orf120Q5SQS8 335 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 CWF19L1Q69YN2 538 aaKnown RBP19.61■□□□□ 0.73
SHH-203ENST00000435425 PASD1Q8IV76 773 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 FAM71AQ8IYT1 594 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 NEK11Q8NG66 645 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 NAA15Q9BXJ9 866 aaKnown RBP19.61■□□□□ 0.73
SHH-203ENST00000435425 STK33Q9BYT3 514 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 FOXQ1Q9C009 403 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 MIS12Q9H081 205 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.61■□□□□ 0.73
SHH-203ENST00000435425 DUS2Q9NX74 493 aaKnown RBP19.61■□□□□ 0.73
SHH-203ENST00000435425 PIAS3Q9Y6X2 628 aa19.61■□□□□ 0.73
SHH-203ENST00000435425 GOLGA6L19H0YKK7 550 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 EPHB6O15197 1021 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 TEX33O43247 280 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 PI15O43692 258 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 GABBR2O75899 941 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 SERPINC1P01008 464 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 GPD2P43304 727 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 PSEN1P49768 467 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 STARD6P59095 220 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 UBXN2BQ14CS0 331 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 FILIP1LQ4L180 1135 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 ASTLQ6HA08 431 aaPredicted RBP19.6■□□□□ 0.73
SHH-203ENST00000435425 ARHGAP18Q8N392 663 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 FAM83CQ9BQN1 747 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 LINC00597Q9H2U6 94 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 TRPV5Q9NQA5 729 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 CYLDQ9NQC7 956 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 SH3BP1Q9Y3L3 701 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 KMT2EQ8IZD2 1858 aa19.6■□□□□ 0.73
SHH-203ENST00000435425 MIA3Q5JRA6 1907 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 GFPT2O94808 682 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 TCF3P15923 654 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 AVPR2P30518 371 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 KRT9P35527 623 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 BPIFB4P59827 614 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 RUNX3Q13761 415 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 ITPRIPL2Q3MIP1 535 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 BTBD8Q5XKL5 378 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 PM20D1Q6GTS8 502 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 RSRC2Q7L4I2 434 aaKnown RBP19.59■□□□□ 0.73
SHH-203ENST00000435425 DDX42Q86XP3 938 aaKnown RBP eCLIP19.59■□□□□ 0.73
SHH-203ENST00000435425 CLEC4CQ8WTT0 213 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 OSCP1Q8WVF1 389 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 HSFY1Q96LI6 401 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 SPAG5Q96R06 1193 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 PDCL3Q9H2J4 239 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 RTN4Q9NQC3 1192 aaKnown RBP19.59■□□□□ 0.73
SHH-203ENST00000435425 HPS4Q9NQG7 708 aa19.59■□□□□ 0.73
SHH-203ENST00000435425 CNGB3Q9NQW8 809 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms