RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 LRRC6Q86X45 466 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 APLFQ8IW19 511 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 DHX37Q8IY37 1157 aaKnown RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 PTCD3Q96EY7 689 aaKnown RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 FGD4Q96M96 766 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 TWNKQ96RR1 684 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 GGA3Q9NZ52 723 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 SLC17A7Q9P2U7 560 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 GTF2IRD1Q9UHL9 959 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 DERAQ9Y315 318 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 TTLL3Q9Y4R7 772 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 A0A0G2JLL6 359 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 GPR25O00155 361 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 B4GALT5O43286 388 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 TPBGLP0DKB5 382 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 TPSB2P20231 275 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 CNTFP26441 200 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 SERPINB9P50453 376 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 YWHAZP63104 245 aaKnown RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 TPSAB1Q15661 275 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 KBTBD12Q3ZCT8 623 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 PLEKHG4Q58EX7 1191 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 PRRT2Q7Z6L0 340 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 MTDHQ86UE4 582 aaKnown RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 CDKL3Q8IVW4 592 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 PLD5Q8N7P1 536 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 CEP120Q8N960 986 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 RXFP2Q8WXD0 754 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 HPDLQ96IR7 371 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 NSL1Q96IY1 281 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 NLRP4Q96MN2 994 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 SPATA33Q96N06 139 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 ZNF570Q96NI8 536 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 SIKE1Q9BRV8 207 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 BTBD10Q9BSF8 475 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 KCNK4Q9NYG8 393 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 ERAP1Q9NZ08 941 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 H7C0C1 242 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 ZNF189O75820 626 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-207ENST00000433762 ECM2O94769 699 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-207ENST00000433762 ITGBL1O95965 494 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-207ENST00000433762 DLDP09622 509 aaKnown RBP14.21□□□□□ -0.13
COL6A3-207ENST00000433762 PDGFRAP16234 1089 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 ATP5OP48047 213 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 NR2C2P49116 596 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 CDH8P55286 799 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 VGLL4Q14135 290 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 TMEM132DQ14C87 1099 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 TBCCQ15814 346 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 STXBP5Q5T5C0 1151 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 ATG16L1Q676U5 607 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 ARHGAP24Q8N264 748 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 PLCD3Q8N3E9 789 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 NT5C1AQ9BXI3 368 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 PDZD7Q9H5P4 517 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 POPDC2Q9HBU9 364 aa14.21□□□□□ -0.13
COL6A3-207ENST00000433762 POLR2AP24928 1970 aaKnown RBP14.21□□□□□ -0.13
COL6A3-207ENST00000433762 COPEO14579 308 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 CXCL11O14625 94 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 BIRC5O15392 142 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 CNMDO75829 334 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 KRT38O76015 456 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 SERPINB4P48594 390 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 YWHAGP61981 247 aaKnown RBP eCLIP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 FAAP100Q0VG06 881 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 KRT81Q14533 505 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 PKDCCQ504Y2 493 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 TIFABQ6ZNK6 161 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 BZW1Q7L1Q6 419 aaKnown RBP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 IGDCC3Q8IVU1 814 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 TRPM4Q8TD43 1214 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 THOC1Q96FV9 657 aaKnown RBP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 SERAC1Q96JX3 654 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 HEXIM2Q96MH2 286 aaKnown RBP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 SLC4A5Q9BY07 1137 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 GCOM2Q9BZD3 368 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 IQCGQ9H095 443 aaKnown RBP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 KCNK13Q9HB14 408 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 GCATO75600 419 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 CBX6O95503 412 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 YBX3P16989 372 aaKnown RBP eCLIP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 OSBPP22059 807 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 PTPN9P43378 593 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 BCAR1P56945 870 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 TAF5Q15542 800 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 C4orf50Q6ZRC1 276 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 FAM183BPQ6ZVS7 135 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 TMEM110Q86TL2 294 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 SESTD1Q86VW0 696 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 MRRFQ96E11 262 aaKnown RBP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 NUDCD1Q96RS6 583 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 MINDY3Q9H8M7 445 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 PCDH18Q9HCL0 1135 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 XAB2Q9HCS7 855 aaKnown RBP14.2□□□□□ -0.14
COL6A3-207ENST00000433762 RAB6BQ9NRW1 208 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 HMGXB4Q9UGU5 601 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 PLLPQ9Y342 182 aa14.2□□□□□ -0.14
COL6A3-207ENST00000433762 CSADQ9Y600 493 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms