RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 SETD3Q86TU7 594 aaPredicted RBP13.6□□□□□ -0.23
SPG11-202ENST00000427534 USP6NLQ92738 828 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 TUBGCP3Q96CW5 907 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 ASCC2Q9H1I8 757 aaPredicted RBP13.6□□□□□ -0.23
SPG11-202ENST00000427534 FAM96AQ9H5X1 160 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 RPS6KL1Q9Y6S9 549 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 FOXN3O00409 490 aaPredicted RBP13.6□□□□□ -0.23
SPG11-202ENST00000427534 BUD23O43709 281 aaKnown RBP13.6□□□□□ -0.23
SPG11-202ENST00000427534 PLA2G6O60733 806 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 IL1R1P14778 569 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 TROAPQ12815 778 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 CNGA3Q16281 694 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 SCUBE3Q8IX30 993 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 ENGASEQ8NFI3 743 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 ZBTB45Q96K62 511 aaPredicted RBP13.6□□□□□ -0.23
SPG11-202ENST00000427534 RIT2Q99578 217 aa13.6□□□□□ -0.23
SPG11-202ENST00000427534 TBC1D3BA6NDS4 549 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 RPA1P27694 616 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 STIP1P31948 543 aaKnown RBP13.59□□□□□ -0.23
SPG11-202ENST00000427534 CSHL1Q14406 222 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 LGI2Q8N0V4 545 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 TATDN2Q93075 761 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 GPRASP2Q96D09 838 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 PCDHGA4Q9Y5G9 962 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 PPP1R3GB7ZBB8 358 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 CYP51A1Q16850 503 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 HERC6Q8IVU3 1022 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 ELOA2Q8IYF1 753 aaPredicted RBP13.59□□□□□ -0.23
SPG11-202ENST00000427534 RUBCNQ92622 972 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 EIF2AQ9BY44 585 aaKnown RBP13.59□□□□□ -0.23
SPG11-202ENST00000427534 AGO4Q9HCK5 861 aaKnown RBP13.59□□□□□ -0.23
SPG11-202ENST00000427534 SHOC2Q9UQ13 582 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 VPS26AO75436 327 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 FEN1P39748 380 aaKnown RBP13.59□□□□□ -0.23
SPG11-202ENST00000427534 CCR4P51679 360 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 PLD3Q8IV08 490 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 DAGLBQ8NCG7 672 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 FAM111AQ96PZ2 611 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 ECSITQ9BQ95 431 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 SOHLH2Q9NX45 425 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 ALG6Q9Y672 507 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 PEX10O60683 326 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 OR1E1P30953 314 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 SERPINB4P48594 390 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 PPP4CP60510 307 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 MAPRE1Q15691 268 aaKnown RBP13.59□□□□□ -0.23
SPG11-202ENST00000427534 NAB2Q15742 525 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 KAZALD1Q96I82 304 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 MTG1Q9BT17 334 aaPredicted RBP13.59□□□□□ -0.23
SPG11-202ENST00000427534 BBS2Q9BXC9 721 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.59□□□□□ -0.23
SPG11-202ENST00000427534 A0A1W2PQJ5 194 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 EIF3DO15371 548 aaKnown RBP eCLIP13.59□□□□□ -0.23
SPG11-202ENST00000427534 PSMD3O43242 534 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 TBC1D4O60343 1298 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 ZNF682O95780 498 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 GYPCP04921 128 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 MSH3P20585 1137 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 FSCN1Q16658 493 aaKnown RBP13.59□□□□□ -0.23
SPG11-202ENST00000427534 OVOS1Q6IE37 1185 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 BPIFA1Q9NP55 256 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 DUSP10Q9Y6W6 482 aa13.59□□□□□ -0.23
SPG11-202ENST00000427534 ABCG8Q9H221 673 aa13.58□□□□□ -0.23
SPG11-202ENST00000427534 DYRK1BQ9Y463 629 aa13.58□□□□□ -0.23
SPG11-202ENST00000427534 PSMD12O00232 456 aaPredicted RBP13.58□□□□□ -0.24
SPG11-202ENST00000427534 GJB1P08034 283 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 INPP5AQ14642 412 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 KRT78Q8N1N4 520 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 PSMC3IPQ9P2W1 217 aaPredicted RBP13.58□□□□□ -0.24
SPG11-202ENST00000427534 MORC2Q9Y6X9 1032 aaPredicted RBP13.58□□□□□ -0.24
SPG11-202ENST00000427534 O00370 1275 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 ATP5HO75947 161 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 FAM86B2P0C5J1 330 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 RALGDSQ12967 914 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 GRB10Q13322 594 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 ZNF280DQ6N043 979 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 ZNF438Q7Z4V0 828 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 ADAM2Q99965 735 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 PCDHB2Q9Y5E7 798 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 SPRP35270 261 aaPredicted RBP13.58□□□□□ -0.24
SPG11-202ENST00000427534 TRIM65Q6PJ69 517 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 SPATA21Q7Z572 469 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 GPSM3Q9Y4H4 160 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 CAPN1P07384 714 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 TCEA1P23193 301 aaKnown RBP13.58□□□□□ -0.24
SPG11-202ENST00000427534 NUDT2P50583 147 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 KLHDC7AQ5VTJ3 777 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 MTSS1LQ765P7 747 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 ST13P5Q8NFI4 369 aaPredicted RBP13.58□□□□□ -0.24
SPG11-202ENST00000427534 CGRRF1Q99675 332 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 YY1AP1Q9H869 796 aa13.58□□□□□ -0.24
SPG11-202ENST00000427534 PRR23D1E9PI22 279 aaPredicted RBP13.57□□□□□ -0.24
SPG11-202ENST00000427534 NR5A2O00482 541 aa13.57□□□□□ -0.24
SPG11-202ENST00000427534 PRR23D2P0DMB1 279 aaPredicted RBP13.57□□□□□ -0.24
SPG11-202ENST00000427534 VCLP18206 1134 aa13.57□□□□□ -0.24
SPG11-202ENST00000427534 BMPR2Q13873 1038 aa13.57□□□□□ -0.24
SPG11-202ENST00000427534 VGLL4Q14135 290 aa13.57□□□□□ -0.24
SPG11-202ENST00000427534 PGM5Q15124 567 aa13.57□□□□□ -0.24
SPG11-202ENST00000427534 FAR2Q96K12 515 aa13.57□□□□□ -0.24
SPG11-202ENST00000427534 IL1RAPL1Q9NZN1 696 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms