RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ENTPD4Q9Y227 616 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 MORC2Q9Y6X9 1032 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CNOT3O75175 753 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PMPCBO75439 489 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 AKAP5P24588 427 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CNTFP26441 200 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CHRNB3Q05901 458 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 BIKQ13323 160 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ACOX1Q15067 660 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 FNDC3BQ53EP0 1204 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TMEM154Q6P9G4 183 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PPIL6Q8IXY8 311 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 RNFT2Q96EX2 444 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 BBS4Q96RK4 519 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 RBM15Q96T37 977 aaKnown RBP eCLIP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TBCDQ9BTW9 1192 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 MLXIPLQ9NP71 852 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 FAM49BQ9NUQ9 324 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TNS3Q68CZ2 1445 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CHURC1-FNTBB4DL54 471 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CYP2D6P10635 497 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 WARSP23381 471 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 NUP107P57740 925 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TRIM32Q13049 653 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 RESTQ13127 1097 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SMAD1Q15797 465 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 HLFQ16534 295 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PPM1LQ5SGD2 360 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SLFN11Q7Z7L1 901 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PRPF39Q86UA1 669 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TMEM159Q96B96 161 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TINF2Q9BSI4 451 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CEP44Q9C0F1 390 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CHORDC1Q9UHD1 332 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ZNF711Q9Y462 761 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CPSF1Q10570 1443 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 MEI4A8MW99 385 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 M0QYT0 321 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ATP5BP06576 529 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 MYL4P12829 197 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 GGCXP38435 758 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CAMK1Q14012 370 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ZNHIT3Q15649 155 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ATP6AP1LQ52LC2 224 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SETMARQ53H47 684 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 BOLA3Q53S33 107 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 HHIPL2Q6UWX4 724 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TRMT11Q7Z4G4 463 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PEX5LQ8IYB4 626 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 COLGALT2Q8IYK4 626 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ADGRF2Q8IZF7 708 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 LRRC71Q8N4P6 559 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SAMD3Q8N6K7 520 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SOCS4Q8WXH5 440 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 GMCL1Q96IK5 515 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ANKRD27Q96NW4 1050 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TBC1D13Q9NVG8 400 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SPG21Q9NZD8 308 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CYB561D2O14569 222 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SLC25A12O75746 678 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CYP7B1O75881 506 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 GLP2RO95838 553 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 FCGR1AP12314 374 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ACADLP28330 430 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 MAGEA9P43362 315 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PEX5P50542 639 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 C21orf59P57076 290 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 DMTNQ08495 405 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 FBXO42Q6P3S6 717 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 NEDD1Q8NHV4 660 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 MTG1Q9BT17 334 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 IL1RL2Q9HB29 575 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CCDC177Q9NQR7 707 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PSME2Q9UL46 239 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 FAM196BA6NMK8 535 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TRIM66O15016 1216 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PSTPIP1O43586 416 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 VPS4BO75351 444 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 NR3C2P08235 984 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 FGRP09769 529 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 MYL12AP19105 171 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 FGFR4P22455 802 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 TKTP29401 623 aaKnown RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ARHGDIBP52566 201 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 DDR2Q16832 855 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CCDC81Q6ZN84 652 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SPATA21Q7Z572 469 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 AHI1Q8N157 1196 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 AGGF1Q8N302 714 aaeCLIP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 AGBL3Q8NEM8 1001 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 SLC30A5Q8TAD4 765 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ASZ1Q8WWH4 475 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 CLEC4MQ9H2X3 399 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-204ENST00000423058 KCTD10Q9H3F6 313 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 ELOVL6Q9H5J4 265 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 PRKAG3Q9UGI9 489 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 POLG2Q9UHN1 485 aa7.07□□□□□ -1.28
SCN1A-204ENST00000423058 MAPRE3Q9UPY8 281 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms